Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1952 ATGGGAACTCCGGAATTCCCTAATCTCGGAAAGCATTGCAACGTTGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGTTGTCACCAGGAATTTCTTCAATGTGTTACACTTCAAATATCAGAATTTGGTTTTGGGTTTTGGGTTTTGGTGTCTTGTGAAGCATCAGGATGTAAAGAGGTCTTCTGTTTGGAGCATCGTAGTTACAATAGGCATAGTTGTCCAAAAGCTGATAGACGGGATGTCACCGTTGTCATTTGTCCGCTTTGTGCCAAAGGAGTTCGTCTCATTCCTGATCAAGACCCAAATATTACTTGGGAGATACATGTAAACACTGAATGTGACCCATCGAATTATGATAAAGTCACAAAGAAGAAAAAGTGCCCCGTACCCAGTTGCAGGGAGTTGTTAACGTTTTCAAATACGATCAAGTGTCGGGACTGCTTGGTGGACCATTGTTTAAAGCACCGTTTCGGACCCGATCATAAGTGTTCTGGACCCAAAAAACCAGAACCAGCAGGTTTTCCATTTGTTGGTCTTCTAAGTAGAAGTAGAAAAGAAGAGAAAGGGCCTAAGAAACCATTGCCCACCACTTCTTCCTCTAAGTGGACTACCCTCCTTAATGCAGCCTCATCTGTTAAAGCCTCTGCCGAAGCAAGCATGACGAAGCTGTCAAATGAAATCAGTCATGCTTGGAAAACCTCAGGCAGCAGCAGTGGCGGAAGTGGAAGTGGACAAGTTGAGCAATGTCCACAATGTGTTGCTAAGTTTTCGTCGGTTTCATCGTTAATAGACCATGTTGAAAAAGTCCATGAAAAGGGTGGCAATCGACCTGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCGAAGTGTAGTAGAGGATTTGTCGATCCCGTTGCCCTCGTGGAGCATATTGAGAGGGATCATGGTGGTACTTCAAGAGCTTGA 957 44.31 MGTPEFPNLGKHCNVEDCKQIDFLPFTCDCCHQEFLQCVTLQISEFGFGFWVLVSCEASGCKEVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYDKVTKKKKCPVPSCRELLTFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKPEPAGFPFVGLLSRSRKEEKGPKKPLPTTSSSKWTTLLNAASSVKASAEASMTKLSNEISHAWKTSGSSSGGSGSGQVEQCPQCVAKFSSVSSLIDHVEKVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23342455 23345417 - Maker00020148 Lcy1g1952 623864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1952 318 ProSiteProfiles Zinc finger AN1-type profile. 125 175 IPR000058 GO:0008270(InterPro)
Lcy1g1952 318 SUPERFAMILY AN1-like Zinc finger 58 89 IPR035896 -
Lcy1g1952 318 MobiDBLite consensus disorder prediction 185 204 - -
Lcy1g1952 318 Pfam AN1-like Zinc finger 131 171 IPR000058 GO:0008270(InterPro)
Lcy1g1952 318 Gene3D Classic Zinc Finger 213 317 - -
Lcy1g1952 318 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 35 - GO:0005737(PANTHER)
Lcy1g1952 318 Gene3D - 111 177 IPR035896 -
Lcy1g1952 318 SMART c2h2final6 251 274 IPR013087 -
Lcy1g1952 318 SMART c2h2final6 289 312 IPR013087 -
Lcy1g1952 318 SUPERFAMILY AN1-like Zinc finger 123 174 IPR035896 -
Lcy1g1952 318 ProSitePatterns Zinc finger C2H2 type domain signature. 291 312 IPR013087 -
Lcy1g1952 318 Gene3D - 2 40 IPR035896 -
Lcy1g1952 318 ProSitePatterns Zinc finger C2H2 type domain signature. 253 274 IPR013087 -
Lcy1g1952 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 317 IPR013087 -
Lcy1g1952 318 SMART AN1_Zf_4 56 82 IPR000058 GO:0008270(InterPro)
Lcy1g1952 318 SMART AN1_Zf_4 131 172 IPR000058 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1952 Lcy-Chr1:23342455 Lcy10g0303 Lcy-Chr10:5407150 3.65E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19646 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1952 - - - 0.0