Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1952 | ATGGGAACTCCGGAATTCCCTAATCTCGGAAAGCATTGCAACGTTGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGTTGTCACCAGGAATTTCTTCAATGTGTTACACTTCAAATATCAGAATTTGGTTTTGGGTTTTGGGTTTTGGTGTCTTGTGAAGCATCAGGATGTAAAGAGGTCTTCTGTTTGGAGCATCGTAGTTACAATAGGCATAGTTGTCCAAAAGCTGATAGACGGGATGTCACCGTTGTCATTTGTCCGCTTTGTGCCAAAGGAGTTCGTCTCATTCCTGATCAAGACCCAAATATTACTTGGGAGATACATGTAAACACTGAATGTGACCCATCGAATTATGATAAAGTCACAAAGAAGAAAAAGTGCCCCGTACCCAGTTGCAGGGAGTTGTTAACGTTTTCAAATACGATCAAGTGTCGGGACTGCTTGGTGGACCATTGTTTAAAGCACCGTTTCGGACCCGATCATAAGTGTTCTGGACCCAAAAAACCAGAACCAGCAGGTTTTCCATTTGTTGGTCTTCTAAGTAGAAGTAGAAAAGAAGAGAAAGGGCCTAAGAAACCATTGCCCACCACTTCTTCCTCTAAGTGGACTACCCTCCTTAATGCAGCCTCATCTGTTAAAGCCTCTGCCGAAGCAAGCATGACGAAGCTGTCAAATGAAATCAGTCATGCTTGGAAAACCTCAGGCAGCAGCAGTGGCGGAAGTGGAAGTGGACAAGTTGAGCAATGTCCACAATGTGTTGCTAAGTTTTCGTCGGTTTCATCGTTAATAGACCATGTTGAAAAAGTCCATGAAAAGGGTGGCAATCGACCTGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCGAAGTGTAGTAGAGGATTTGTCGATCCCGTTGCCCTCGTGGAGCATATTGAGAGGGATCATGGTGGTACTTCAAGAGCTTGA | 957 | 44.31 | MGTPEFPNLGKHCNVEDCKQIDFLPFTCDCCHQEFLQCVTLQISEFGFGFWVLVSCEASGCKEVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLIPDQDPNITWEIHVNTECDPSNYDKVTKKKKCPVPSCRELLTFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKPEPAGFPFVGLLSRSRKEEKGPKKPLPTTSSSKWTTLLNAASSVKASAEASMTKLSNEISHAWKTSGSSSGGSGSGQVEQCPQCVAKFSSVSSLIDHVEKVHEKGGNRPGAKKVVIDACPKCSRGFVDPVALVEHIERDHGGTSRA | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 23342455 | 23345417 | - | Maker00020148 | Lcy1g1952 | 623864 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1952 | 318 | ProSiteProfiles | Zinc finger AN1-type profile. | 125 | 175 | IPR000058 | GO:0008270(InterPro) | |
Lcy1g1952 | 318 | SUPERFAMILY | AN1-like Zinc finger | 58 | 89 | IPR035896 | - | |
Lcy1g1952 | 318 | MobiDBLite | consensus disorder prediction | 185 | 204 | - | - | |
Lcy1g1952 | 318 | Pfam | AN1-like Zinc finger | 131 | 171 | IPR000058 | GO:0008270(InterPro) | |
Lcy1g1952 | 318 | Gene3D | Classic Zinc Finger | 213 | 317 | - | - | |
Lcy1g1952 | 318 | PANTHER | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED | 5 | 35 | - | GO:0005737(PANTHER) | |
Lcy1g1952 | 318 | Gene3D | - | 111 | 177 | IPR035896 | - | |
Lcy1g1952 | 318 | SMART | c2h2final6 | 251 | 274 | IPR013087 | - | |
Lcy1g1952 | 318 | SMART | c2h2final6 | 289 | 312 | IPR013087 | - | |
Lcy1g1952 | 318 | SUPERFAMILY | AN1-like Zinc finger | 123 | 174 | IPR035896 | - | |
Lcy1g1952 | 318 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 291 | 312 | IPR013087 | - | |
Lcy1g1952 | 318 | Gene3D | - | 2 | 40 | IPR035896 | - | |
Lcy1g1952 | 318 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 253 | 274 | IPR013087 | - | |
Lcy1g1952 | 318 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 289 | 317 | IPR013087 | - | |
Lcy1g1952 | 318 | SMART | AN1_Zf_4 | 56 | 82 | IPR000058 | GO:0008270(InterPro) | |
Lcy1g1952 | 318 | SMART | AN1_Zf_4 | 131 | 172 | IPR000058 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1952 | Lcy-Chr1:23342455 | Lcy10g0303 | Lcy-Chr10:5407150 | 3.65E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19646 | None | None | None | None | Lcy | TF |
Pathway information
