Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1957 ATGGAGGTCGATGCTAATTCAGGGAAACCGTCGAAACAGATTGGGGGAGGTCAGGTTTGTCAGATCTGCAGCGATTCCGTTGGCACGACGGCCGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCATTTCCGGTTTGCCGTCCTTGTTATGAGTACGAGAGGAAAGATGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTAATGGAGAAGCAGTGGAAGATGGTGATGGTAATGGAGTAGCAGGGGCACAAGAAAGACACCATAAGTTACCTGAGCGCACTCTTAGCTGGGATACCAATTATGATAAGGAGGGATCTTTTAATCATATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAATTGTCAGCTACATCTCCCGAGCGGCTCTCCATGGCATCTCCTGAAAGTGGGAGCAGGGCTAACTATAGAATCATGGATCAATCGAGAGATTCGGGATCGGCTAGGTTTGGCAATGTGGCCTGGAAAGAGAGAATAGATAGTTGGAAGGTGAAGCAGGACAAGAGTGTGCCACCGATGAGTGTCAGTCATGCACCTTCTGAAGGTAGAGGTGGTGCAGATTTTGATGCCAGCACTGATGTCGTGATCGACGATTCTTTGCTAAATGATGAAGCTCGTCAGCCTCTTTCGAGGAAGGTTTCTATTCCATCCTCTAGGATTAACCCTTATAGGATGGTCATAGTTCTGCGACTTGTTATTCTTTCCATCTTCTTGCACTACCGAATTACAAATCCAGTTCCCAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATATGGTTTGCTATATCTTGGATTTTGGATCAGTTCCCCAAATGGCTTCCAGTCAATCGTGAGACATATCTTGATAGGCTTGCTCTGCGATATGATCGCGAAGGAGAGCCATCTCAGTTGGCTGCTGTCGACATATTTGTCAGTACTGTCGATCCTCTGAAAGAACCTCCCCTTGTTACAGCCAATACAGTCCTATCAATTCTCTCTGTGGACTATCCAGTCGATAAAGTTTCTTGCTATGTATCAGATGATGGTGCTGCTATGTTAACATTTGAAGCGTTGTCCGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTGCAAGAAGTACAGCATTGAGCCACGAGCACCAGAGTGGTATTTTGCTCAGAAGATTGATTACTTAAAGGACAAGGTTCATCCATCATTTGTGAAGGAGCGGCGAGCAATGAAGAGAGAATATGAGGAGTTTAAAATTCGTATCAATGGACTTGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGGTGGGTCATGCAAGATGGTACACCATGGCCTGGAAATAACACTAGAGATCATCCAGGAATGATTCAGGTTTTCTTAGGGCACAGTGGAGGACTTGATACTGAGGGTAACGAGCTCCCACGTTTAGTTTATGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCACTTGTTCGCGTTTCTGCTGTTCTTACCAATGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCATTGCGGGAAGCTATGTGTTTTATGATGGATCCTAATCTTGGAAAATCAGTGTGCTACGTTCAGTTTCCCCAGAGGTTTGATGGGATTGATAGAAATGATCGATACGCCAATCGTAACACTGTTTTCTTTGATATCAATCTTCGAGGCTTGGATGGCATCCAAGGTCCAGTTTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCATTGTATGGCTATGAACCCCCTCTCAAACCCAAGCATAAAAAGCCAGGGCTCTTTTCCAGTTGCTTCGGGAAATCAAAAAAGAAAAGTTCTAAATCGAAAAGGAAGGACTCTGATAAGAAGCAAACAAGTAAAAATGTCGATCCCACCGTGCCAATATTCAACCTTGAGGATATTGAAGAAGGAGTTGAAGGTGCCGGTTTTGATGACGAGAAATCACTACTGATGTCACAAATGAGCCTGGAGAAGAGGTTTGGTCAATCAGCTGTATTTGTTGCTTCCACACTAATGGAGAATGGTGGTGTCCCGCAGTCTGCCACTCCAGAATCTCTCCTTAAAGAAGCCATTCATGTCATCAGTTGCGGATACGAGGACAAAACAGACTGGGGTAGTGAAATTGGATGGATTTATGGCTCAGTCACAGAAGATATTTTGACAGGATTCAAGATGCACGCCCGTGGTTGGAGATCAATCTATTGCATACCAGAGCGTCCTGCATTTAAAGGTTCTGCTCCTATTAATCTTTCCGATCGTCTAAACCAAGTGCTTCGGTGGGCGTTAGGTTCAGTTGAAATTCTTTTCAGTCGGCATTGTCCTTTGTGGTACGGTTATGGTGGACGATTGAAATGGCTCGAGAGATTTGCTTATGTTAACACCACCATTTACCCAATAACATCCATTCCTCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACTGGAAAGTTCATTATTCCTCAGATTAGTAATCTTGCCAGTATCTGGTTCATTTCTCTCTTTCTTTCCATCTTTGCCACTGGTATTCTGGAAATGAGATGGAGTGGTGTCGGAATCGATGAATGGTGGAGAAATGAGCAGTTCTGGGTTATTGGAGGTGTGTCGGCCCATCTGTTTGCTGTTTTCCAAGGTCTGCTTAAAGTTCTTGCTGGAATCGATACCAACTTCACGGTTACTTCAAAAGCATCCGATGAAGACGGAGATTTTGCTGAGCTCTACATGTTCAAGTGGACCACTCTCCTCATTCCCCCAACTACTCTCCTGATTATCAACATAGTTGGAGTTGTTGCTGGAATTTCTTATGCCATTAACAGTGGCTATCAATCTTGGGGTCCCCTTTTCGGCAAACTGTTCTTCGCTTTCTGGGTGATTATTCATTTATATCCCTTCCTTAAGGGTCTGATGGGTCGCCAGAACCGAACTCCCACGATTGTGGTTGTATGGTCCATCCTCCTTGCCTCAATTTTCTCCCTTTTATGGGTTCGAATCGATCCCTTCACAACCCGAGTAACCGGTCCCGATGTCGAACAGTGTGGAATCAACTGCTAA 3153 44.59 MEVDANSGKPSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVNGEAVEDGDGNGVAGAQERHHKLPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSATSPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVVIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILSIFLHYRITNPVPNAFALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKERRAMKREYEEFKIRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQTSKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPERPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPLWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYMFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1050
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23473829 23480117 - Maker00020194 Lcy1g1957 623869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1957 1050 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 858 IPR029044 -
Lcy1g1957 1050 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Lcy1g1957 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 93 IPR013083 -
Lcy1g1957 1050 FunFam Cellulose synthase 439 613 - -
Lcy1g1957 1050 CDD mRING-HC-C4C4_CesA 18 68 - -
Lcy1g1957 1050 SUPERFAMILY RING/U-box 8 87 - -
Lcy1g1957 1050 MobiDBLite consensus disorder prediction 131 150 - -
Lcy1g1957 1050 MobiDBLite consensus disorder prediction 623 655 - -
Lcy1g1957 1050 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Lcy1g1957 1050 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 440 613 IPR029044 -
Lcy1g1957 1050 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 230 1019 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lcy1g1957 1050 Pfam Cellulose synthase 322 1043 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1957 Lcy-Chr1:23473829 Lcy2g0192 Lcy-Chr2:1503640 0 dispersed
Lcy3g1447 Lcy-Chr3:41225149 Lcy1g1957 Lcy-Chr1:23473829 0 transposed
Lcy3g1908 Lcy-Chr3:46316711 Lcy1g1957 Lcy-Chr1:23473829 0 transposed
Lcy5g1811 Lcy-Chr5:40912544 Lcy1g1957 Lcy-Chr1:23473829 0 transposed
Lcy9g1827 Lcy-Chr9:43369630 Lcy1g1957 Lcy-Chr1:23473829 0 transposed
Lcy1g1957 Lcy-Chr1:23473829 Lcy2g1684 Lcy-Chr2:25262027 7.30E-59 wgd
Lcy1g1957 Lcy-Chr1:23473829 Lcy8g0954 Lcy-Chr8:33806725 1.77E-300 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1957 K10999 - csv:101211779 2106.26