Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g2002 | ATGGCGGATTTCCAAAGCTACATAATTCTCTTCCTCATATGGCTAGTTTCCACCATCACAATTCGCTTCATTTTTGCCAAAACCAAAACAAACCCTCGTCTTCCTCCAAGCCCTTTTGCCCTTCCCATCATCGGCCATCTCCACCTCCTAGGACCATTACCCCACAAAGCTTTCCACAAGCTCTCAACCCGCCATGGACCCTTAATGCACCTCCGTTTAGGCTCCGTCCCCTGCGTCGTAGTTTCGTCGGCCGAAACAGCGAAACAAGTCCTCAAAACACACGAATCTTCCTTCTCCAACAGACCGCATCTGGCTGCAGTTGACTATCTAACCTACGGCTCTGCGGATTTCTCCTTTGCTCCCTATGGACCCTATTGGAAGTTCATGAAGAAGCTTTGCATGTCCGAGCTGCTCGGCGGCCGGACACTCGACAGTCTCGAGCTTGTGAGACGGGACGAGACGCTGCGGTTTCTACGGTCGCTGCAGACGAAGGCGGTGGAAGGGAGAGAAGTCGATGTTGGAGGAGAATTGATGATGTTGAGCAACAATGTGATATCCAGAATGACATTGGGGAAAAGATGTGCTGAGGAAGAAGAGGAAGCTGAGGGGATAAGGAAATTGGTGAAGGATGTAGCTGAGCTCACAGGGACTTTTAATGTTTCTGATTATATTTGGTTTTGTAAGAATTTGGACTTGCAGGGGCTTGGGAAGAGGCTGAGGAAAGTTCGTGAGAGGTTTGATGAGATGATGGAGAGGATGATAAAGGAGCATGAAGAGAATAGGGAGATGGAGATAAAGGGAAATGGTGATGGCAAAGTTAAGGATTTGCTTGATATTTTGCTTCTTAGGTTTAGAGATGAAAGCTCCGAGGTGAAGTTGACTAGAGAGAACATCAAGGCCTTCGTTCTGGTGAAGATTCTTCTTTTGAATTACATGGACATATTTGCAGCAGGGACAGACGCATCAGCAATAACAACAGAATGGGCATTGGCAGAGCTAATCAACAACCCAAACATAATGGAGAAAGCAAGACAAGAACTTCACACAATTGTAGGAAAGAACAGACTGGTTGAAGAATCAGACATTGCCAATCTTCCCTATCTCCAAGCAATAGTAAAAGAGACACTAAGGCTTCACTCAAGCCCATTGATTGTGAGAGAGTCATCAGAGAGCTGCACAATAAATGGCTATGAGATTCCACCAAAGACCCAATTGTATGTGAATGTTTGGGCCATTGGGAGAGACCCAAATCACTGGGAAAACCCTCTTGAGTTTGAGCCAGAGAGGTTTATGGACAAAGAAGGGAGTGTGAGTACTGGTGATTTGAGAGGGCAGAATTTTCAGCTGTTGCCATTTGGGAGTGGGAGAAGAAGCTGTCCTGGAACAACTCTGGCATTGCTGATGGTTCAGACTACTTTGGCTTGTATGGTTCAGTGCTTTGATTGGAAGGTTAGTGGAGGAGATGGCAAAGTTGATATGGAAGAAGGGCCTGGCCTTACGCTTCCTAGAGCACAGCCTTTGGTTTGTGTACCAGTGGCTTGTCTTAGTCCATTTCCATCACTTTGA | 1566 | 46.49 | MADFQSYIILFLIWLVSTITIRFIFAKTKTNPRLPPSPFALPIIGHLHLLGPLPHKAFHKLSTRHGPLMHLRLGSVPCVVVSSAETAKQVLKTHESSFSNRPHLAAVDYLTYGSADFSFAPYGPYWKFMKKLCMSELLGGRTLDSLELVRRDETLRFLRSLQTKAVEGREVDVGGELMMLSNNVISRMTLGKRCAEEEEEAEGIRKLVKDVAELTGTFNVSDYIWFCKNLDLQGLGKRLRKVRERFDEMMERMIKEHEENREMEIKGNGDGKVKDLLDILLLRFRDESSEVKLTRENIKAFVLVKILLLNYMDIFAAGTDASAITTEWALAELINNPNIMEKARQELHTIVGKNRLVEESDIANLPYLQAIVKETLRLHSSPLIVRESSESCTINGYEIPPKTQLYVNVWAIGRDPNHWENPLEFEPERFMDKEGSVSTGDLRGQNFQLLPFGSGRRSCPGTTLALLMVQTTLACMVQCFDWKVSGGDGKVDMEEGPGLTLPRAQPLVCVPVACLSPFPSL | 521 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 25227080 | 25229102 | - | Maker00020224 | Lcy1g2002 | 623914 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g2002 | 521 | FunFam | Cytochrome P450 family protein | 26 | 509 | - | - | |
| Lcy1g2002 | 521 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | E-class P450 group I signature | 306 | 323 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | E-class P450 group I signature | 459 | 482 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | E-class P450 group I signature | 180 | 198 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | E-class P450 group I signature | 408 | 432 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | E-class P450 group I signature | 449 | 459 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | E-class P450 group I signature | 326 | 352 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | CDD | CYP93 | 66 | 511 | - | - | |
| Lcy1g2002 | 521 | PANTHER | CYTOCHROME P450 93A3-LIKE | 8 | 512 | - | - | |
| Lcy1g2002 | 521 | Pfam | Cytochrome P450 | 35 | 509 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | P450 superfamily signature | 450 | 459 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | P450 superfamily signature | 459 | 470 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | P450 superfamily signature | 317 | 334 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | PRINTS | P450 superfamily signature | 370 | 381 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | SUPERFAMILY | Cytochrome P450 | 30 | 511 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g2002 | 521 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 452 | 461 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy1g2002 | 521 | Coils | Coil | 232 | 252 | - | - | |
| Lcy1g2002 | 521 | Gene3D | Cytochrome P450 | 25 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g1999 | Lcy-Chr1:25181923 | Lcy1g2002 | Lcy-Chr1:25227080 | 0 | dispersed | |
| Lcy1g2002 | Lcy-Chr1:25227080 | Lcy6g1734 | Lcy-Chr6:34142993 | 0 | dispersed | |
| Lcy1g2634 | Lcy-Chr1:49461496 | Lcy1g2002 | Lcy-Chr1:25227080 | 1.07E-67 | dispersed | |
| Lcy1g2001 | Lcy-Chr1:25201728 | Lcy1g2002 | Lcy-Chr1:25227080 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy1g2002 | K24188 | - | csv:101213143 | 839.721 |