Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g2011 ATGATCCCATTTGCCTCATTAATCCTCACCTTCTTCTCTTTTCTCGTTTCCTTCTCTTCCTCTCTCAACTCCGACGGCCTGTCCCTTCTCGCCCTCAAGGCCGCCATTGAAACCGACCCATCTCACGTCCTCGAGTCCTGGTCCGAGTTCGACTCGACCCCATGCCACTGGCCTGGAATCGTCTGCACTCGCGACCGAGTCACTCAGCTCTCTCTCCCCAACAAAGGCCTCACCGGCTACATCCCCTCCGAACTCGGCCTCCTCGATTCCCTCCGCCGGCTCAGTCTCGCATTCAACAACTTCTCTAAGTTGATCCCGTCTCATCTCTACAACGCCACAAATCTCGTCGTTCTAGACCTTTCTCACAACTCCCTCTCTGGTCCGGTTTCGGATCAAATCGGCGACCTGAGGAAGCTTCGGCATCTCGATTTGTCCTCAAATTTCCTCAATGGCTCTCTCCCGAAGCGGCTCACCGAGTTAACCGAACTCGTCGGGACTCTCAATCTGTCCTACAATCGATTCTCCGGCGAGGTTCCGCCGTCCTTCGGGAACCTGCCGTTGATTGTGAATCTCGATGTCCGTCACAACAATCTCACCGGAAAGATCCCGCAGGTCGGTTCGCTGTTGAATCAAGGCCCGACTGCGTTCTCCGGCAACCCGAGTCTCTGTGGGTTTCCGTTACAGACGCCATGCCCGGAAGCTCAGAACCCGAACGTTTTCCCTGAGAATCCGCAGAATCCCAAGTCTCTGAACGGTAATTTTCCGGGATACGGCGGCGGGAGAGCGACGGGTGGAGGCAGTGGCGCCGCCGCGTCGGCGACGGTGGCGGTGGTTTCTTCGATTTTCGCGGTGGTCGGGGCGGTGTCGCTGACAGTGTGGTGGTTCCGGAGGAAGGCGGAAGTGGGGAGGCCGGCGGAGGTCAAAACGGGAAAGGGGAGTGCGGAGGGGGGGAGTGATGTTGATTTGGAAGGGCAAGATGGTAAATTCGCGGTGATTGATGAAGGGATGAATTTGGAATTAGAAGATTTGTTGAGGGCATCGGCGTATGTCGTGGGGAAAAGTAGGAGTGGGATAGTGTATAAGGTAGTGGCGGGGCGGGGATCGGGTGCGGCCGCAAGTATTGTAGCTGTTAGGAGACTTAACGATGGTGATGCCACGTTGACGTTTAAGGATTTTGAGTATGAGATGGAGTCCATTGGTAGGGTCCACCACCCCAACATCGTACGGTTGAGAGCTTATTACTATGCAAGTGATGAGAAATTGCTGGTCACTGATTTCATCAAGAATGGAAGCTTGCACTCTGCCCTCCATGGAGGTCCCTCCAGTTCTTTGTCAGCACTGCCATGGTCTGCAAGGTTAAAAATTGCCCAAGGAGCTGCAAGGGGTTTGGCATACATTCACGAATTTGGTGCTCGGAAGTACGTGCATGGAAACGTAAAATCGACGAAGATCCTTCTGGACGATGATATGGAGCCTTACGTTTCAGGTTTTGGTCTCACTCGTCTCGGCCAGGGAACACCTAAGTTCACCGCAACCTCATCCAAGAAGCTGAGCTCAAGCCAGAACACGATCACCTCAATGATGGGGCCAAGCATTTCAACTCCCTCAGCGATGTACTTGGCGCCCGAGGTTCGGGAGTTTGGAGGGAAGTACACTCAGAAATGTGATGTCTACTCGTTCGGTATCGTCCTCCTGGAGCTTTTGAGCGGTAGATTGCCCGATGCAGGATCGGAAAATGATGGGAAGGGATTGGAATGCTTTGTGAGGAAGGCGTTTCAAGAAGAGCGCCCCTTGACTGAGGTAATAGACCCGGCACTTGTGCCTGAGATCTATGCCAAGAAACAGGTCGTTTCTACCTTTCACATTGCACTAAATTGCACGGAGCTCGATCCCGAGATGCGTCCGAGAATGAGAACGGTTTCGGAGAGTCTCGACCGAATCAAATCTCAGTGA 1953 53.66 MIPFASLILTFFSFLVSFSSSLNSDGLSLLALKAAIETDPSHVLESWSEFDSTPCHWPGIVCTRDRVTQLSLPNKGLTGYIPSELGLLDSLRRLSLAFNNFSKLIPSHLYNATNLVVLDLSHNSLSGPVSDQIGDLRKLRHLDLSSNFLNGSLPKRLTELTELVGTLNLSYNRFSGEVPPSFGNLPLIVNLDVRHNNLTGKIPQVGSLLNQGPTAFSGNPSLCGFPLQTPCPEAQNPNVFPENPQNPKSLNGNFPGYGGGRATGGGSGAAASATVAVVSSIFAVVGAVSLTVWWFRRKAEVGRPAEVKTGKGSAEGGSDVDLEGQDGKFAVIDEGMNLELEDLLRASAYVVGKSRSGIVYKVVAGRGSGAAASIVAVRRLNDGDATLTFKDFEYEMESIGRVHHPNIVRLRAYYYASDEKLLVTDFIKNGSLHSALHGGPSSSLSALPWSARLKIAQGAARGLAYIHEFGARKYVHGNVKSTKILLDDDMEPYVSGFGLTRLGQGTPKFTATSSKKLSSSQNTITSMMGPSISTPSAMYLAPEVREFGGKYTQKCDVYSFGIVLLELLSGRLPDAGSENDGKGLECFVRKAFQEERPLTEVIDPALVPEIYAKKQVVSTFHIALNCTELDPEMRPRMRTVSESLDRIKSQ 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25540046 25545041 - Maker00020109 Lcy1g2011 623923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g2011 650 MobiDBLite consensus disorder prediction 241 265 - -
Lcy1g2011 650 Gene3D Ribonuclease Inhibitor 165 233 IPR032675 -
Lcy1g2011 650 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515(InterPro)
Lcy1g2011 650 Pfam Protein tyrosine and serine/threonine kinase 351 644 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g2011 650 SUPERFAMILY L domain-like 23 228 - -
Lcy1g2011 650 FunFam Leucine-rich repeat receptor-like kinase 27 131 - -
Lcy1g2011 650 Pfam Leucine rich repeat N-terminal domain 22 63 IPR013210 -
Lcy1g2011 650 Gene3D Ribonuclease Inhibitor 21 164 IPR032675 -
Lcy1g2011 650 SUPERFAMILY Protein kinase-like (PK-like) 350 644 IPR011009 -
Lcy1g2011 650 ProSiteProfiles Protein kinase domain profile. 345 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g2011 650 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 648 IPR046959 -
Lcy1g2011 650 Pfam Leucine rich repeat 90 147 IPR001611 GO:0005515(InterPro)
Lcy1g2011 650 PRINTS Leucine-rich repeat signature 136 149 - -
Lcy1g2011 650 PRINTS Leucine-rich repeat signature 115 128 - -
Lcy1g2011 650 Gene3D Phosphorylase Kinase; domain 1 330 426 - -
Lcy1g2011 650 Gene3D Transferase(Phosphotransferase) domain 1 427 650 - -
Lcy1g2011 650 FunFam Leucine-rich repeat receptor-like protein kinase 138 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2011 Lcy-Chr1:25540046 Lcy7g0057 Lcy-Chr7:442757 2.25E-112 dispersed
Lcy1g2011 Lcy-Chr1:25540046 Lcy12g1064 Lcy-Chr12:18498706 2.09E-32 wgd
Lcy1g2011 Lcy-Chr1:25540046 Lcy2g2014 Lcy-Chr2:38132784 2.77E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65686 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g2011 - - - 0.0