Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g2082 ATGGCTTCCCCCTTCAAACCTCCATTGTTGCTCTCCTTAGCCTTCGCTTTCTTCATTTTGGGTTCTTCTTCGTCTGAGGAATCGACCCTTTTGGCCTTCAAAGCCTCCATTGAAGATTTCGCAAACTCTCTCTCGAACTGGGTCTCTTCTTCTCCGACCCATTTCTGTAACTGGACTGGAATTTCTTGTGTGAGCTCTCCTCCTTCTTTGCTTTCGGTTTCCGCCATTGATCTTCAGGGTCTGAACCTCTCTGGTGAAATTTCGTCTTCCATTTGTGAACTCCCTCGTTTGGCTCATCTTAATCTGGCCGATAATCGGTTCAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGCTCGTTGGAGACTTTGAATCTGAGCAATAATCTCATTTGGGGGACGATCCCAGATCAGATTTCTACGTTTGCTTCTTTGAGAGTGCTTGATTTTGGGAAGAATCATATTGAAGGGAAGATTCCTGAGGGCATTGGGGCTTTGAAGAATCTTCAAATTCTGAATCTGAGAAGCAACTTGATTTCTGGTAGAGTTTCTTCTGTTGTTTTTCATAATCTTACCGAGCTTCTTGTTGTTGATTTGTCTGAAAATTCTTATCTGTTGAGTGACATTCCTAGTGAGATTGGGAAGCTTGAGAAGCTTGAGGAGCTATGGCTTCAAAGCTCTGGTTTCTATGGTGAAATCCCTTCTTCTTTGTTGGGTTTGAGAAGCTTGGCTGTTTTGGATCTTTCTCGGAATAATCTCACTGGGAAACTCCCTGAAATGTTGGGTTCTTCTCTGAAGAATTTGGTGTCTTTTGATGTTTCTGAGAATAAGCTTGTGGGGTCTTTCCCAAATGGGTTTTGTAGTGGAAAAGGCCTTGTGAGTCTTAGTCTTCATACCAATTTTTTCACTGGGACTTTGCCTGATTCCTTGAACCAATGCTTGAATCTCGAGAGGTTTCAAGTTCAGAACAATGGGTTTTCTGGGGATTTTCCTAAAGCCCTGTGGTCATTGCCTAAGATTAAGCTCATCAGAGCTGAAAACAATGGCTTCTCTGGTGAAGTTCCAGAGTCTATATCAATGGCTGCTCAGCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTTCGAGTAAGATACCCCGAGGTCTCGGGTCGATTCGGAGCTTATACCGATTCTCTGCTTCGCTCAACCGCTTTTATGGTGAATTGCCACCAAACTTCTGTGATTCACCATTGATGAGTATCATTAATCTGTCCCACAATTCTCTTTCGGGTCGAATTCCTGAGCCGAAAAACTGCAAGAAACTGGTCTCTCTGTCCTTAGCAGGCAATAGTCTTACTGGAGAAATTCCAACTTCTCTTGCTGATCTACCTGTGTTAACTTACCTTGATCTTTCTGATAACAATCTCACTGGTTTGATCCCTCAAGGACTCGAAAACTTAAAGCTTGCGCTCTTTAATGTTTCGTTCAATCGACTATCGGGCGCTGTTCCGTTCTCGTTGATTTCGGGGCTACCAGCTTCATATCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCTCAAGGTCATCCAACAAGCCATATGTCTGGACTTAACAAAATGACATGTGCCCTCATCTCCATAGCTTGTGTTTTAGGAGTTATGAGCTTAGCTGCCGGGTTCTTTCTGTATTACCGATCCTACAAACCGAAATCCCGAGTCGATAACTGGCACTCGGTCTACTTCTACCCTCTTAGAATCAGTGAACATGAGTTGATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGGGGGAGCTTTTGGCCAAGTGTTCATTCTAAGTTTACCGAGCCGTGAACTAATCGCCGTAAAAAAACTGGTTAACTTCGGGAGTCGTTCGTGGAAGTCGTTGAAAGCCGAGGTCAAGACATTGGCCAAGATCAGGCACAAGAACATCATCAAAATCCTGGGGTTTTGCTACTCTGATGATGCCATTTTTCTGATCTATGAATTCTTACACAAAGGAAGCTTGGCTGACTTGATATGCAGAAATGATTCTTGTCTGAATTGGAATGTGAGACTGAGAATTGCCATTGAGGTTGCTCAAGGACTAGCTTACATTCACAAGGACCATGCCCCCCATTTACTTCATCGAAACGTCAAATCGTCGAACATTCTATTGGACGCTGACTTTGTCCCGAAGCTCACTGATTTTTCTCTTCACCATATCGTTGGAGAGTCGGCATTTCACTCGACCGTGGCTTCGGAATCTGCTAATTCCTGCTATATTGCACCAGAGTATAAATACAACAAAAAGGCAACAGAGCAAATGGATGTGTACAGCTTTGGTGTAGTGTTGCTTGAACTGGTGACCGGGAGACAAGCCGAGCGATCGGAATCAACAGACTCTCTCGACGTCGTCCAGTGGGTGAGAAGGAAGGTGAACATAGCCAATGGAGCTTCCCAAGTCCTGGACCCGAGCGTCTCGGAGCATTCTCAACAACAAATGCTGGAAGCTCTGGACATTGCCCTCCAATGCACTTCCATGATGCCTGAAAAACGACCATCGATGCTCGAAGTCGCCAAGGCACTTCAACTGATCAGCTCGACGAAAAACCTCCACGATGCAGCCTCCTCGGCTGCAGAGGATGGTTCGGTTCCGAGCTGA 2664 44.97 MASPFKPPLLLSLAFAFFILGSSSSEESTLLAFKASIEDFANSLSNWVSSSPTHFCNWTGISCVSSPPSLLSVSAIDLQGLNLSGEISSSICELPRLAHLNLADNRFNQPIPLHLSQCSSLETLNLSNNLIWGTIPDQISTFASLRVLDFGKNHIEGKIPEGIGALKNLQILNLRSNLISGRVSSVVFHNLTELLVVDLSENSYLLSDIPSEIGKLEKLEELWLQSSGFYGEIPSSLLGLRSLAVLDLSRNNLTGKLPEMLGSSLKNLVSFDVSENKLVGSFPNGFCSGKGLVSLSLHTNFFTGTLPDSLNQCLNLERFQVQNNGFSGDFPKALWSLPKIKLIRAENNGFSGEVPESISMAAQLEQVQLDNNSFSSKIPRGLGSIRSLYRFSASLNRFYGELPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSLTGEIPTSLADLPVLTYLDLSDNNLTGLIPQGLENLKLALFNVSFNRLSGAVPFSLISGLPASYLQGNPDLCGPGLQTPCSQGHPTSHMSGLNKMTCALISIACVLGVMSLAAGFFLYYRSYKPKSRVDNWHSVYFYPLRISEHELIMGMNEKTAQGCGGAFGQVFILSLPSRELIAVKKLVNFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCYSDDAIFLIYEFLHKGSLADLICRNDSCLNWNVRLRIAIEVAQGLAYIHKDHAPHLLHRNVKSSNILLDADFVPKLTDFSLHHIVGESAFHSTVASESANSCYIAPEYKYNKKATEQMDVYSFGVVLLELVTGRQAERSESTDSLDVVQWVRRKVNIANGASQVLDPSVSEHSQQQMLEALDIALQCTSMMPEKRPSMLEVAKALQLISSTKNLHDAASSAAEDGSVPS 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27892884 27896257 - Maker00020221 Lcy1g2082 623994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g2082 887 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Lcy1g2082 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 671 871 - -
Lcy1g2082 887 Gene3D Ribonuclease Inhibitor 186 265 IPR032675 -
Lcy1g2082 887 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 264 527 - -
Lcy1g2082 887 PANTHER OS04G0122200 PROTEIN 41 129 IPR051809 -
Lcy1g2082 887 FunFam Leucine-rich repeat family protein 25 184 - -
Lcy1g2082 887 Gene3D Ribonuclease Inhibitor 23 185 IPR032675 -
Lcy1g2082 887 SMART LRR_typ_2 191 216 IPR003591 -
Lcy1g2082 887 SMART LRR_typ_2 456 479 IPR003591 -
Lcy1g2082 887 SMART LRR_typ_2 166 190 IPR003591 -
Lcy1g2082 887 SMART LRR_typ_2 94 118 IPR003591 -
Lcy1g2082 887 SMART LRR_typ_2 240 264 IPR003591 -
Lcy1g2082 887 SMART LRR_typ_2 265 289 IPR003591 -
Lcy1g2082 887 SMART LRR_typ_2 119 142 IPR003591 -
Lcy1g2082 887 Pfam Protein tyrosine and serine/threonine kinase 604 862 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g2082 887 Gene3D Phosphorylase Kinase; domain 1 602 671 - -
Lcy1g2082 887 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515(InterPro)
Lcy1g2082 887 Pfam Leucine rich repeat 434 492 IPR001611 GO:0005515(InterPro)
Lcy1g2082 887 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515(InterPro)
Lcy1g2082 887 SUPERFAMILY Protein kinase-like (PK-like) 604 869 IPR011009 -
Lcy1g2082 887 ProSiteProfiles Protein kinase domain profile. 595 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g2082 887 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 585 670 - -
Lcy1g2082 887 Gene3D Ribonuclease Inhibitor 266 532 IPR032675 -
Lcy1g2082 887 SUPERFAMILY L domain-like 24 288 - -
Lcy1g2082 887 Gene3D Transferase(Phosphotransferase) domain 1 672 883 - -
Lcy1g2082 887 SUPERFAMILY L domain-like 206 516 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2082 Lcy-Chr1:27892884 Lcy5g1855 Lcy-Chr5:41365553 8.69E-57 dispersed
Lcy1g2082 Lcy-Chr1:27892884 Lcy2g1571 Lcy-Chr2:21454477 1.58E-40 wgd
Lcy1g2082 Lcy-Chr1:27892884 Lcy4g0776 Lcy-Chr4:9268109 1.25E-41 wgd
Lcy1g2082 Lcy-Chr1:27892884 Lcy7g1441 Lcy-Chr7:24257963 4.47E-41 wgd
Lcy1g2082 Lcy-Chr1:27892884 Lcy7g1362 Lcy-Chr7:20156940 4.19E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65687 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g2082 - - - 0.0