Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g2103 | ATGGCTGACCCATGTTCCAACTCATTAGCAAGTGTTCTAAAATTCAACTCCCTCCTCCACCATTTCCCACCCTCACAACCCTCAACTTCTCCTCCACAGGTGAATATGTCTCACAATTGCTTCTCTTATCCCTACCCGAACCCGCCTCCACCGTCATCTCCGCCGCTACGAGAGGCTCTACCACTTCTCGGGCTGATATCTCCACCCGAGCAGCGGCAGGAGCAGGAAGAAGAAGACGACGGCGGAGGCAGTGGTGGCGACGATGGCTCGGTGACCGTGGCGCTGCACATAGGGCTACCGAGCCCTAGCGCGGCGGAGATGGCTTCTGTGATGTGTGGTTCTTCATCAGAGATTGATCATGTTAGGGATGGATCAGATCATGGTAATAATAATAATCAGGATGATTTTGGACAGTCTACAAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGCTCTCAGTATAGAAAAGGCCCCGAATCGCTCCGCGGGACGCAGCCAACGGGCATGCTAAGGCTTCCTTGCTACTGCTGCGCACCGGGGTGCCGCAACAACATCGACCACCCGCGGGCCAAGCCGCTGAAGGACTTCAGAACCCTGCAAACACACTACAAGCGCAAGCATGGCCTCAAGCCCTTCATGTGCCGCAAGTGCGGTAAGGCGTTCGCCGTGCGCGGGGACTGGCGAACGCACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATCTGTGGCTCCGATTTCAAGCACAAGCGCTCCCTCAAGGACCATGTCAAGGCCTTTGGTAGCGACCACGCCGCGTACGGCGGTGGCGGGATCGATGGGTTCGGAGACGAGGAGGATGAGCCTGCTTCCGAAGTCGAGCAGGATAACGATGAGTGA | 981 | 54.84 | MADPCSNSLASVLKFNSLLHHFPPSQPSTSPPQVNMSHNCFSYPYPNPPPPSSPPLREALPLLGLISPPEQRQEQEEEDDGGGSGGDDGSVTVALHIGLPSPSAAEMASVMCGSSSEIDHVRDGSDHGNNNNQDDFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGSDHAAYGGGGIDGFGDEEDEPASEVEQDNDE | 326 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 28576337 | 28579554 | - | Maker00020372 | Lcy1g2103 | 624015 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g2103 | 326 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 247 | 267 | IPR013087 | - | |
Lcy1g2103 | 326 | MobiDBLite | consensus disorder prediction | 43 | 57 | - | - | |
Lcy1g2103 | 326 | MobiDBLite | consensus disorder prediction | 308 | 326 | - | - | |
Lcy1g2103 | 326 | Pfam | Zinc finger, C2H2 type | 163 | 182 | IPR013087 | - | |
Lcy1g2103 | 326 | Gene3D | Classic Zinc Finger | 162 | 185 | - | - | |
Lcy1g2103 | 326 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 163 | 190 | IPR013087 | - | |
Lcy1g2103 | 326 | FunFam | zinc finger protein WIP2-like | 162 | 185 | - | - | |
Lcy1g2103 | 326 | PANTHER | ZINC FINGER PROTEIN WIP2 | 33 | 324 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Lcy1g2103 | 326 | MobiDBLite | consensus disorder prediction | 117 | 138 | - | - | |
Lcy1g2103 | 326 | SMART | c2h2final6 | 163 | 185 | IPR013087 | - | |
Lcy1g2103 | 326 | SMART | c2h2final6 | 247 | 267 | IPR013087 | - | |
Lcy1g2103 | 326 | MobiDBLite | consensus disorder prediction | 304 | 326 | - | - | |
Lcy1g2103 | 326 | Gene3D | Classic Zinc Finger | 225 | 300 | - | - | |
Lcy1g2103 | 326 | SUPERFAMILY | beta-beta-alpha zinc fingers | 229 | 267 | IPR036236 | - | |
Lcy1g2103 | 326 | MobiDBLite | consensus disorder prediction | 24 | 94 | - | - | |
Lcy1g2103 | 326 | FunFam | Zinc finger protein WIP2 | 216 | 298 | - | - | |
Lcy1g2103 | 326 | SUPERFAMILY | beta-beta-alpha zinc fingers | 159 | 185 | IPR036236 | - | |
Lcy1g2103 | 326 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 165 | 185 | IPR013087 | - | |
Lcy1g2103 | 326 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 246 | 270 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0910 | Lcy-Chr10:28817782 | Lcy1g2103 | Lcy-Chr1:28576337 | 6.78E-107 | dispersed | |
Lcy1g2103 | Lcy-Chr1:28576337 | Lcy8g2102 | Lcy-Chr8:47205856 | 5.00E-121 | dispersed | |
Lcy1g2103 | Lcy-Chr1:28576337 | Lcy5g0658 | Lcy-Chr5:8156638 | 3.56E-125 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19648 | None | None | None | None | Lcy | TF |
Pathway information
