Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g2103 ATGGCTGACCCATGTTCCAACTCATTAGCAAGTGTTCTAAAATTCAACTCCCTCCTCCACCATTTCCCACCCTCACAACCCTCAACTTCTCCTCCACAGGTGAATATGTCTCACAATTGCTTCTCTTATCCCTACCCGAACCCGCCTCCACCGTCATCTCCGCCGCTACGAGAGGCTCTACCACTTCTCGGGCTGATATCTCCACCCGAGCAGCGGCAGGAGCAGGAAGAAGAAGACGACGGCGGAGGCAGTGGTGGCGACGATGGCTCGGTGACCGTGGCGCTGCACATAGGGCTACCGAGCCCTAGCGCGGCGGAGATGGCTTCTGTGATGTGTGGTTCTTCATCAGAGATTGATCATGTTAGGGATGGATCAGATCATGGTAATAATAATAATCAGGATGATTTTGGACAGTCTACAAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGCTCTCAGTATAGAAAAGGCCCCGAATCGCTCCGCGGGACGCAGCCAACGGGCATGCTAAGGCTTCCTTGCTACTGCTGCGCACCGGGGTGCCGCAACAACATCGACCACCCGCGGGCCAAGCCGCTGAAGGACTTCAGAACCCTGCAAACACACTACAAGCGCAAGCATGGCCTCAAGCCCTTCATGTGCCGCAAGTGCGGTAAGGCGTTCGCCGTGCGCGGGGACTGGCGAACGCACGAGAAGAATTGTGGCAAGCTTTGGTACTGCATCTGTGGCTCCGATTTCAAGCACAAGCGCTCCCTCAAGGACCATGTCAAGGCCTTTGGTAGCGACCACGCCGCGTACGGCGGTGGCGGGATCGATGGGTTCGGAGACGAGGAGGATGAGCCTGCTTCCGAAGTCGAGCAGGATAACGATGAGTGA 981 54.84 MADPCSNSLASVLKFNSLLHHFPPSQPSTSPPQVNMSHNCFSYPYPNPPPPSSPPLREALPLLGLISPPEQRQEQEEEDDGGGSGGDDGSVTVALHIGLPSPSAAEMASVMCGSSSEIDHVRDGSDHGNNNNQDDFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGSDHAAYGGGGIDGFGDEEDEPASEVEQDNDE 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28576337 28579554 - Maker00020372 Lcy1g2103 624015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g2103 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 247 267 IPR013087 -
Lcy1g2103 326 MobiDBLite consensus disorder prediction 43 57 - -
Lcy1g2103 326 MobiDBLite consensus disorder prediction 308 326 - -
Lcy1g2103 326 Pfam Zinc finger, C2H2 type 163 182 IPR013087 -
Lcy1g2103 326 Gene3D Classic Zinc Finger 162 185 - -
Lcy1g2103 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Lcy1g2103 326 FunFam zinc finger protein WIP2-like 162 185 - -
Lcy1g2103 326 PANTHER ZINC FINGER PROTEIN WIP2 33 324 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Lcy1g2103 326 MobiDBLite consensus disorder prediction 117 138 - -
Lcy1g2103 326 SMART c2h2final6 163 185 IPR013087 -
Lcy1g2103 326 SMART c2h2final6 247 267 IPR013087 -
Lcy1g2103 326 MobiDBLite consensus disorder prediction 304 326 - -
Lcy1g2103 326 Gene3D Classic Zinc Finger 225 300 - -
Lcy1g2103 326 SUPERFAMILY beta-beta-alpha zinc fingers 229 267 IPR036236 -
Lcy1g2103 326 MobiDBLite consensus disorder prediction 24 94 - -
Lcy1g2103 326 FunFam Zinc finger protein WIP2 216 298 - -
Lcy1g2103 326 SUPERFAMILY beta-beta-alpha zinc fingers 159 185 IPR036236 -
Lcy1g2103 326 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Lcy1g2103 326 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 246 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0910 Lcy-Chr10:28817782 Lcy1g2103 Lcy-Chr1:28576337 6.78E-107 dispersed
Lcy1g2103 Lcy-Chr1:28576337 Lcy8g2102 Lcy-Chr8:47205856 5.00E-121 dispersed
Lcy1g2103 Lcy-Chr1:28576337 Lcy5g0658 Lcy-Chr5:8156638 3.56E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19648 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g2103 - - - 0.0