Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g2128 ATGGCTCCAGGAAGCAGTACCTGCAAAGAAATTGTTGATTCTCATCCTTCAGTTTCTGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAGTTCTACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACTAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGTCCAAACGGCCACACATTGTGCTCGAACTGCAAGATCAGAGTTAGTAACTCTTGCCCGACCTGTCGTCATGAACTTGGAAATATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCCTGCAGATACCAGAATTTGGGTTGTCAAGATATTTTTCCTTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACAGGTGACATCCCATCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCATGACGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTCGAAAATGCCACATGGATGCTAACGGTTTTCAATTGCTTTGGAAGGCAGTTCTGCTTGCATTTCGAGGCATTTCAGCTAGGAATGGCACCTGTTTACATGGCGTTTTTACGATTCATGGGTGATGATAACGAAGCGAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAACGGGCGTAAACTGGTATGGCAGGGAATTCCGAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCGGGTGGGGAAAGGCAAGAGCTGAAGCTGAGAATCACGGGTCGAATATGGAAAGAAGAATGA 924 45.24 MAPGSSTCKEIVDSHPSVSGHDIAMSKSENNSTSSKVLLGLGGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLVWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29369174 29374455 + Maker00020138 Lcy1g2128 624040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g2128 307 SUPERFAMILY TRAF domain-like 112 304 - -
Lcy1g2128 307 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 300 IPR008974 GO:0005515(InterPro)
Lcy1g2128 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 110 - -
Lcy1g2128 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 111 IPR013083 -
Lcy1g2128 307 Pfam Sina, zinc finger 108 183 - -
Lcy1g2128 307 ProSiteProfiles Zinc finger RING-type profile. 59 95 IPR001841 -
Lcy1g2128 307 MobiDBLite consensus disorder prediction 1 29 - -
Lcy1g2128 307 Pfam Sina, TRAF-like domain 203 300 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lcy1g2128 307 SUPERFAMILY RING/U-box 53 100 - -
Lcy1g2128 307 CDD Sina 173 301 - -
Lcy1g2128 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 166 IPR013083 -
Lcy1g2128 307 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 59 94 IPR049548 -
Lcy1g2128 307 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 34 302 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lcy1g2128 307 ProSiteProfiles Zinc finger SIAH-type profile. 112 172 IPR013010 GO:0008270(InterPro)
Lcy1g2128 307 CDD RING-HC_SIAHs 57 95 - -
Lcy1g2128 307 FunFam E3 ubiquitin-protein ligase SINAT3 111 167 - -
Lcy1g2128 307 FunFam E3 ubiquitin-protein ligase SINAT5-like 168 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2128 Lcy-Chr1:29369174 Lcy6g0068 Lcy-Chr6:613316 6.20E-169 dispersed
Lcy10g1027 Lcy-Chr10:32393723 Lcy1g2128 Lcy-Chr1:29369174 7.57E-163 transposed
Lcy7g0691 Lcy-Chr7:6398544 Lcy1g2128 Lcy-Chr1:29369174 1.59E-152 transposed
Lcy8g2151 Lcy-Chr8:47645821 Lcy1g2128 Lcy-Chr1:29369174 1.93E-170 transposed
Lcy1g2128 Lcy-Chr1:29369174 Lcy4g0830 Lcy-Chr4:10772557 4.18E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g2128 K04506 - rcu:8260973 577.015