Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g2128 | ATGGCTCCAGGAAGCAGTACCTGCAAAGAAATTGTTGATTCTCATCCTTCAGTTTCTGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAGTTCTACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACTAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGTCCAAACGGCCACACATTGTGCTCGAACTGCAAGATCAGAGTTAGTAACTCTTGCCCGACCTGTCGTCATGAACTTGGAAATATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCCTGCAGATACCAGAATTTGGGTTGTCAAGATATTTTTCCTTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACAGGTGACATCCCATCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCATGACGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTCGAAAATGCCACATGGATGCTAACGGTTTTCAATTGCTTTGGAAGGCAGTTCTGCTTGCATTTCGAGGCATTTCAGCTAGGAATGGCACCTGTTTACATGGCGTTTTTACGATTCATGGGTGATGATAACGAAGCGAAGAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAACGGGCGTAAACTGGTATGGCAGGGAATTCCGAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCGGGTGGGGAAAGGCAAGAGCTGAAGCTGAGAATCACGGGTCGAATATGGAAAGAAGAATGA | 924 | 45.24 | MAPGSSTCKEIVDSHPSVSGHDIAMSKSENNSTSSKVLLGLGGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLVWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29369174 | 29374455 | + | Maker00020138 | Lcy1g2128 | 624040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g2128 | 307 | SUPERFAMILY | TRAF domain-like | 112 | 304 | - | - | |
Lcy1g2128 | 307 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 167 | 300 | IPR008974 | GO:0005515(InterPro) | |
Lcy1g2128 | 307 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 13 | 110 | - | - | |
Lcy1g2128 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 111 | IPR013083 | - | |
Lcy1g2128 | 307 | Pfam | Sina, zinc finger | 108 | 183 | - | - | |
Lcy1g2128 | 307 | ProSiteProfiles | Zinc finger RING-type profile. | 59 | 95 | IPR001841 | - | |
Lcy1g2128 | 307 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Lcy1g2128 | 307 | Pfam | Sina, TRAF-like domain | 203 | 300 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Lcy1g2128 | 307 | SUPERFAMILY | RING/U-box | 53 | 100 | - | - | |
Lcy1g2128 | 307 | CDD | Sina | 173 | 301 | - | - | |
Lcy1g2128 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 166 | IPR013083 | - | |
Lcy1g2128 | 307 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 59 | 94 | IPR049548 | - | |
Lcy1g2128 | 307 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 34 | 302 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Lcy1g2128 | 307 | ProSiteProfiles | Zinc finger SIAH-type profile. | 112 | 172 | IPR013010 | GO:0008270(InterPro) | |
Lcy1g2128 | 307 | CDD | RING-HC_SIAHs | 57 | 95 | - | - | |
Lcy1g2128 | 307 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 111 | 167 | - | - | |
Lcy1g2128 | 307 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 168 | 300 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g2128 | Lcy-Chr1:29369174 | Lcy6g0068 | Lcy-Chr6:613316 | 6.20E-169 | dispersed | |
Lcy10g1027 | Lcy-Chr10:32393723 | Lcy1g2128 | Lcy-Chr1:29369174 | 7.57E-163 | transposed | |
Lcy7g0691 | Lcy-Chr7:6398544 | Lcy1g2128 | Lcy-Chr1:29369174 | 1.59E-152 | transposed | |
Lcy8g2151 | Lcy-Chr8:47645821 | Lcy1g2128 | Lcy-Chr1:29369174 | 1.93E-170 | transposed | |
Lcy1g2128 | Lcy-Chr1:29369174 | Lcy4g0830 | Lcy-Chr4:10772557 | 4.18E-145 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g2128 | K04506 | - | rcu:8260973 | 577.015 |