Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g2133 | ATGGGAGACGGCAATAACACCAACAGAGGCCTTGTCTCGGCCAACGCCGCCGCTAATTCCAACCGGAACAACAACAACAACAACGGCAGCCACCACAAGAAGCCGGAGTGGCTGCAGCAGTACGATCTAATCGGGAAGATTGGAGAGGGAACCTATGGCCTTGTATTCCTTGCTAAAATCAAACCCCCTTCGCCGAGTCGCGGCAAGTCCATCGCCATCAAGAAGTTCAAGCAATCCAAGGACGGTGATGGCGTCTCCCCAACTGCTATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAGAATGTCGTTAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATCTAGCCTTTGATTATGCTGAACATGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTAAATCAGTACACCGTTAAATCCTTACTCTGGCAACTTCTCAATGGATTAAATTATCTCCACAGTAATTGGATCATTCATCGTGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAGGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCAGAAAATGGAGTTGTCGTCACCATTTGGTATCGTGCACCTGAACTTCTCCTTGGAGCAAAGCACTACACTAGTGCTGTTGGGCAAGAAGTCAAAGGGACTCCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCCACACTGGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATGTTCAGCACATACAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATATGATCTTCTGTCCAAAATGCTCGAGTATGTCTTCTTTTCAGAACTTAATTTTCTACCATAG | 978 | 44.27 | MGDGNNTNRGLVSANAAANSNRNNNNNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDVQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYVFFSELNFLP | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29590317 | 29594445 | - | Maker00020354 | Lcy1g2133 | 624045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g2133 | 325 | Pfam | Protein kinase domain | 41 | 236 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g2133 | 325 | Gene3D | Transferase(Phosphotransferase) domain 1 | 124 | 316 | - | - | |
Lcy1g2133 | 325 | SUPERFAMILY | Protein kinase-like (PK-like) | 36 | 315 | IPR011009 | - | |
Lcy1g2133 | 325 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 169 | 181 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g2133 | 325 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 123 | - | - | |
Lcy1g2133 | 325 | SMART | serkin_6 | 41 | 324 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g2133 | 325 | PANTHER | CELL DIVISION PROTEIN KINASE | 40 | 315 | IPR050108 | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER) | |
Lcy1g2133 | 325 | ProSitePatterns | Protein kinases ATP-binding region signature. | 47 | 75 | IPR017441 | GO:0005524(InterPro) | |
Lcy1g2133 | 325 | ProSiteProfiles | Protein kinase domain profile. | 41 | 325 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g2133 | 325 | FunFam | Cyclin-dependent kinase e-1 | 29 | 125 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g2133 | Lcy-Chr1:29590317 | Lcy7g0070 | Lcy-Chr7:687724 | 4.81E-49 | dispersed | |
Lcy1g2133 | Lcy-Chr1:29590317 | Lcy2g1538 | Lcy-Chr2:20416519 | 1.75E-06 | wgd | |
Lcy1g2133 | Lcy-Chr1:29590317 | Lcy7g1665 | Lcy-Chr7:32912490 | 3.38E-32 | wgd | |
Lcy1g2133 | Lcy-Chr1:29590317 | Lcy9g0607 | Lcy-Chr9:20148016 | 2.93E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65689 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g2133 | K02208 | - | csv:101203984 | 596.275 |