Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g2133 ATGGGAGACGGCAATAACACCAACAGAGGCCTTGTCTCGGCCAACGCCGCCGCTAATTCCAACCGGAACAACAACAACAACAACGGCAGCCACCACAAGAAGCCGGAGTGGCTGCAGCAGTACGATCTAATCGGGAAGATTGGAGAGGGAACCTATGGCCTTGTATTCCTTGCTAAAATCAAACCCCCTTCGCCGAGTCGCGGCAAGTCCATCGCCATCAAGAAGTTCAAGCAATCCAAGGACGGTGATGGCGTCTCCCCAACTGCTATCCGCGAAATTATGTTACTGCGGGAAATATCACACGAGAATGTCGTTAAGCTTGTAAATGTTCATATCAACCATGCAGATATGTCGCTGTATCTAGCCTTTGATTATGCTGAACATGACCTCTACGAAATCATTAGACATCATCGGGACAAGGCTAACCATCCCCTAAATCAGTACACCGTTAAATCCTTACTCTGGCAACTTCTCAATGGATTAAATTATCTCCACAGTAATTGGATCATTCATCGTGATTTAAAGCCATCAAATATTTTGGTTATGGGTGAAGGAGAAGAACAGGGAGTGGTTAAAATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATCAGAAAATGGAGTTGTCGTCACCATTTGGTATCGTGCACCTGAACTTCTCCTTGGAGCAAAGCACTACACTAGTGCTGTTGGGCAAGAAGTCAAAGGGACTCCAAATCCTTTCCAGCTTGATCAACTCGACAAGATTTTTAAGGTTTTAGGCCATCCCACACTGGAGAAGTGGCCAACACTTGCTAATCTTCCACATTGGCAACAAGATGTTCAGCACATACAGGGGCATAAATATGACAATGCTGGATTGTATAATGTTGTCCACCTTTCTCCAAAAAGTCCTGCATATGATCTTCTGTCCAAAATGCTCGAGTATGTCTTCTTTTCAGAACTTAATTTTCTACCATAG 978 44.27 MGDGNNTNRGLVSANAAANSNRNNNNNNGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDVQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYVFFSELNFLP 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29590317 29594445 - Maker00020354 Lcy1g2133 624045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g2133 325 Pfam Protein kinase domain 41 236 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g2133 325 Gene3D Transferase(Phosphotransferase) domain 1 124 316 - -
Lcy1g2133 325 SUPERFAMILY Protein kinase-like (PK-like) 36 315 IPR011009 -
Lcy1g2133 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g2133 325 Gene3D Phosphorylase Kinase; domain 1 19 123 - -
Lcy1g2133 325 SMART serkin_6 41 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g2133 325 PANTHER CELL DIVISION PROTEIN KINASE 40 315 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Lcy1g2133 325 ProSitePatterns Protein kinases ATP-binding region signature. 47 75 IPR017441 GO:0005524(InterPro)
Lcy1g2133 325 ProSiteProfiles Protein kinase domain profile. 41 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g2133 325 FunFam Cyclin-dependent kinase e-1 29 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2133 Lcy-Chr1:29590317 Lcy7g0070 Lcy-Chr7:687724 4.81E-49 dispersed
Lcy1g2133 Lcy-Chr1:29590317 Lcy2g1538 Lcy-Chr2:20416519 1.75E-06 wgd
Lcy1g2133 Lcy-Chr1:29590317 Lcy7g1665 Lcy-Chr7:32912490 3.38E-32 wgd
Lcy1g2133 Lcy-Chr1:29590317 Lcy9g0607 Lcy-Chr9:20148016 2.93E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65689 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g2133 K02208 - csv:101203984 596.275