Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g2134 | ATGTTGAATTGTACTCTTCATCAGAATCTGATCGGAGATCGCGATTTGCTGCAGCCATTAATGTGGTCAAAGTCCGATAATAAACCCGACGGATCTGAGATGTTTAACAACACATCAAAAGGGGAAAACGATTCTCACGGAGGAATGAACGCTAACGCACCACATGTCGTCAAAAATCCTCCCGATTCTCTCAGAAGAATCGATCAAATCTCCAAAAACGGCGTAAATTCCGGCAATCAGACGGCGACGATGAACTCTGAGATTCCTTCCGGCCAGCCAGGGGGATCGATTGCGCCGATTCCGAGCGGCGCACCGGCAACGAACATGAAGAACAACAACAGTAGCAGCACCAACAACAACAACAACAGCGGCGGAGGAGGGGGAAATACTTACCGGTGCGACAGCATGGAGACGCCGGGAGTGGTGATCAAACCGCACACAGGCGGCGATGTGCGATGGGACGCCGTAAACATGGTGTCGAAAGGAGGTCAGTTGAATCTGAGCCATTTCAGGCTTCTGAAGCGGCTGGGTTATGGGGACATTGGAAGTGTTTATCTGGTGGAACTGAGAGGGACGGATACGTTTTTCGCCATGAAAGTGATGGACAAAGCTTCATTGGCAAGTCGGAATAAGCTTCTGAGGGCGCAGACGGAGAGGGAGATTTTAGGGCTTTTGGATCATCCATTTTTGCCGACTCTGTATTCGTATTTCGAAACTGATAAGTTCTATTGCTTGGTTATGGAGTTTTGTAGCGGTGGTAATCTTCATTCTCTTCGTCAAAAGCAACCCAACAAGTATTTTACAGAAGAAGCTGCCAGGTTCTATGCATCAGAGGTTCTATTAGCACTGGAATACCTTCACATGTTAGGCATAGTCTACAGAGATTTGAAACCAGAGAACCTGTTAATCCGAGACGAAGGTCACATCATGCTCTCCGATTTCGACCTCTCTCTCCGCTGCTCCGTCAGCCCCACTCTCGTCAAATCCTCCTCCGTCAACGTCAACGGCAGCTCCACCACCGGCAACGGCGGCAGCAACGGCGGCGGCAGCGGTGGTATGCTCGACGACGAGTTCGTCGTCCACGGCTGTATGCAGCCTTCCAACTTCCTCCCTCGCATCCTCCCTTCCAAGAAGAATCGCAAGTCCAAATCCGACTTCGGCCTCTTCGTCGGCGGCGCCCTGCCGGAACTCATGGCCGAGCCCACCAACGTCAGATCTATGTCCTTCGTCGGCACGCACGAGTATTTGGCGCCGGAGATCATCCAAGGCGAAGGCCACGGCAGCGCCGTCGACTGGTGGACCTTCGGGATCTTCCTCTACGAGCTTCTTCACGGAACCACGCCCTTCAAAGGATCTGGAAACAGAGCCACTCTGTTCAACGTCGTCGGACAGCCGCTCAGATTCCCGGATTCGCCGCAGGTCAGTCTAGCGGCGAGGGATCTGATCAGAGGCCTTCTCGTGAAGGAGCCGCAAAAGAGAATCGCCTATAGAAGAGGCGCTACTGAGATCAAACAGCATCCCTTCTTCGATGGAGTGAATTGGGCGTTGGTGAGAAGCGCTATGCCGCCGCACGTGCCGGAGCCCGTCGACTTCTCGCAGTTCGCCAGTAAGAAGGGCAGCGGCGGCGGCGGTGTTGGTGGCGGAGGTGGAGGTGGCGGTGGTGGTGGCGGCGGCGGTGGCGGAGTGGTGGAAGAGAAGAAGGCGGTGGAAGTAGTGGCGGAGGCGGGGGAGAATTCTTCGCCTTCGACTGGTAGCGACCCCAATTATGTGGATTTTGAGTACTTCTAG | 1788 | 53.97 | MLNCTLHQNLIGDRDLLQPLMWSKSDNKPDGSEMFNNTSKGENDSHGGMNANAPHVVKNPPDSLRRIDQISKNGVNSGNQTATMNSEIPSGQPGGSIAPIPSGAPATNMKNNNSSSTNNNNNSGGGGGNTYRCDSMETPGVVIKPHTGGDVRWDAVNMVSKGGQLNLSHFRLLKRLGYGDIGSVYLVELRGTDTFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSTTGNGGSNGGGSGGMLDDEFVVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGALPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVGQPLRFPDSPQVSLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFASKKGSGGGGVGGGGGGGGGGGGGGGGVVEEKKAVEVVAEAGENSSPSTGSDPNYVDFEYF | 595 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 29645105 | 29648046 | - | Maker00020041 | Lcy1g2134 | 624046 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g2134 | 595 | ProSiteProfiles | Protein kinase domain profile. | 170 | 509 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy1g2134 | 595 | FunFam | Serine/threonine-protein kinase AGC1-7 | 402 | 527 | - | - | |
| Lcy1g2134 | 595 | MobiDBLite | consensus disorder prediction | 536 | 595 | - | - | |
| Lcy1g2134 | 595 | Gene3D | Transferase(Phosphotransferase) domain 1 | 384 | 527 | - | - | |
| Lcy1g2134 | 595 | MobiDBLite | consensus disorder prediction | 22 | 133 | - | - | |
| Lcy1g2134 | 595 | FunFam | Serine/threonine-protein kinase AGC1-5 | 168 | 253 | - | - | |
| Lcy1g2134 | 595 | PANTHER | FLIPPASE KINASE 1-RELATED | 91 | 531 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
| Lcy1g2134 | 595 | Pfam | Protein kinase domain | 171 | 323 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy1g2134 | 595 | Pfam | Protein kinase domain | 358 | 509 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy1g2134 | 595 | SUPERFAMILY | Protein kinase-like (PK-like) | 167 | 533 | IPR011009 | - | |
| Lcy1g2134 | 595 | CDD | STKc_phototropin_like | 168 | 530 | - | - | |
| Lcy1g2134 | 595 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 291 | 303 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy1g2134 | 595 | FunFam | serine/threonine-protein kinase D6PK-like | 254 | 321 | - | - | |
| Lcy1g2134 | 595 | MobiDBLite | consensus disorder prediction | 29 | 46 | - | - | |
| Lcy1g2134 | 595 | Gene3D | Phosphorylase Kinase; domain 1 | 168 | 253 | - | - | |
| Lcy1g2134 | 595 | SMART | serkin_6 | 170 | 509 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy1g2134 | 595 | MobiDBLite | consensus disorder prediction | 105 | 129 | - | - | |
| Lcy1g2134 | 595 | MobiDBLite | consensus disorder prediction | 69 | 92 | - | - | |
| Lcy1g2134 | 595 | Gene3D | Transferase(Phosphotransferase) domain 1 | 254 | 323 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0511 | Lcy-Chr1:4446560 | Lcy1g2134 | Lcy-Chr1:29645105 | 3.91E-173 | dispersed | |
| Lcy1g2134 | Lcy-Chr1:29645105 | Lcy5g1341 | Lcy-Chr5:31986784 | 6.33E-184 | dispersed | |
| Lcy3g1338 | Lcy-Chr3:39775917 | Lcy1g2134 | Lcy-Chr1:29645105 | 3.81E-60 | transposed | |
| Lcy1g2134 | Lcy-Chr1:29645105 | Lcy12g1309 | Lcy-Chr12:28672732 | 2.93E-41 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65690 | None | None | None | None | Lcy | PK |
Pathway information