Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g2325 ATGGTCGGCCTCAGCCCGAGGCCGACCATTCGGTCTGCTTGCGCAGGCCGAGCTCGTTCGCCTCTGTTTGGTCTCTCTGCCTCTGGCCGCCCCGATTCTGCCTGGTTTGTCTCGAAACGCCTTCGAATTCCTAAAAACCCTAGGAGCATGAGCAGTCATTTAAACCCCTCTTTGTCACTGAAGAAGGTATCCCGAACTCTATTCTCTACTCTCTCCTCTTGCTCTCTTGCTCTCCTCCTTCCGTTTTCTGACTTAAGCATCGGAGGCAGTGTGACAAGCACCACACCGGTGTTCAGCTTTACTATTTTGCAGGCCACGTTTTTCCCCTCTCATACAAATTTACCGTTGGTGGCACATGAAGATCAGGTAATTTTGGACCACCATGGTGTACAAGGAGCTGACGAGGACACCCGGGCGGGGATAGGACCAGGAGACGACCCAGAGGAAGACCGGACCAACGGGCTGGGCCAACGTGGCCCGACCCGTACGGTCGGCCTCGGCCTTGGGCCGAGGCCGAGCATAATGGTCGGCCTCGGCCGACCACTCGGCCCGCGTACCTCTGGCCGCCCCGGTTCCGCCTGGTTTGTCCCGAAACACCTCCGAACTCCTAAAAACCCTAGGAGCATGAGCAGCATAATTATCCTACTTCCTTCTTCCTCATCCATCATACAATCATCAAACAATTTCCTTATCGAAATGGCTTGGTTTCTTGGCTTTCTTTTTCTATTTTTCATTTCTTCTGTTACTGCTTGTGATCGTTGTGTTTTTCAGTCTAAAGCTAGTCATCTTTATGAATCACCTACTACATATGGGGGAGCACGTGGTTATGGCAACTTGGCATTGCAGTTCTCAAATGGCTTCTTTGCAACTGTTGTTCCTTCTCTTTATAAACAAGGAGTTGGATGTGGCGCATGCTACCAAGTAAGGTGCAAAAATAGAAGGTGTTGCAACACAGTGGGGACTAAAGTAGTACTAACGGATCAAAATAATGACAACATAACAGACCTTGTTCTCAGTAAAAGAGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTACAGATCTTTTGAATCTTGGAGTTGTTGATGTTGAATACAAGAGGGTGCCCGGTGAATATCCAAATAAAAATTTGTTGATACAAGTGGAAGAATCAAGTTATAATCCATTCAACTTGGCAATAAAATTTTTGTACCAAGGTGGCCAAACATATATAGTTGCTGTGGATATAGCTCAGGTTGGTACTTCCGATTGGAGCCATATGAAGAGAAATTATGGAGCTGTTTGGGACACAGACAACGTACCTGAAGGTGCATTGCAACTAAGAATGGTGGTAACTTCAGGATATGATGGAAAATGGGTTTGGGCAAAGTCTGTGTTTCCTGCTGATTGGAGAGCTGGGGTAATCTATGACACTGGGGTTTAA 1422 47.33 MVGLSPRPTIRSACAGRARSPLFGLSASGRPDSAWFVSKRLRIPKNPRSMSSHLNPSLSLKKVSRTLFSTLSSCSLALLLPFSDLSIGGSVTSTTPVFSFTILQATFFPSHTNLPLVAHEDQVILDHHGVQGADEDTRAGIGPGDDPEEDRTNGLGQRGPTRTVGLGLGPRPSIMVGLGRPLGPRTSGRPGSAWFVPKHLRTPKNPRSMSSIIILLPSSSSIIQSSNNFLIEMAWFLGFLFLFFISSVTACDRCVFQSKASHLYESPTTYGGARGYGNLALQFSNGFFATVVPSLYKQGVGCGACYQVRCKNRRCCNTVGTKVVLTDQNNDNITDLVLSKRAFFTMALNGKGTDLLNLGVVDVEYKRVPGEYPNKNLLIQVEESSYNPFNLAIKFLYQGGQTYIVAVDIAQVGTSDWSHMKRNYGAVWDTDNVPEGALQLRMVVTSGYDGKWVWAKSVFPADWRAGVIYDTGV 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36285431 36288447 + Maker00020500 Lcy1g2325 624237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g2325 473 Pfam Expansin C-terminal domain 379 460 IPR007117 -
Lcy1g2325 473 SUPERFAMILY PHL pollen allergen 375 470 IPR036749 -
Lcy1g2325 473 Gene3D - 246 370 IPR036908 -
Lcy1g2325 473 Gene3D - 372 473 IPR036749 -
Lcy1g2325 473 MobiDBLite consensus disorder prediction 130 155 - -
Lcy1g2325 473 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 271 375 IPR007112 -
Lcy1g2325 473 Pfam Lytic transglycolase 291 365 IPR009009 -
Lcy1g2325 473 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 389 471 IPR007117 -
Lcy1g2325 473 MobiDBLite consensus disorder prediction 130 163 - -
Lcy1g2325 473 PRINTS Expansin/Lol pI family signature 457 471 IPR007118 GO:0005576(InterPro)
Lcy1g2325 473 PRINTS Expansin/Lol pI family signature 292 310 IPR007118 GO:0005576(InterPro)
Lcy1g2325 473 PRINTS Expansin/Lol pI family signature 358 374 IPR007118 GO:0005576(InterPro)
Lcy1g2325 473 PRINTS Expansin/Lol pI family signature 270 288 IPR007118 GO:0005576(InterPro)
Lcy1g2325 473 PRINTS Expansin/Lol pI family signature 417 431 IPR007118 GO:0005576(InterPro)
Lcy1g2325 473 PANTHER EXPANSIN-B3 241 473 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lcy1g2325 473 SUPERFAMILY Barwin-like endoglucanases 242 374 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2325 Lcy-Chr1:36285431 Lcy3g0804 Lcy-Chr3:29059405 1.15E-167 dispersed
Lcy4g0096 Lcy-Chr4:1360141 Lcy1g2325 Lcy-Chr1:36285431 2.23E-92 transposed
Lcy1g2325 Lcy-Chr1:36285431 Lcy10g0971 Lcy-Chr10:31175163 6.11E-29 wgd
Lcy1g2325 Lcy-Chr1:36285431 Lcy11g0371 Lcy-Chr11:6220664 6.81E-26 wgd
Lcy1g2325 Lcy-Chr1:36285431 Lcy3g0798 Lcy-Chr3:28901480 1.13E-101 wgd
Lcy1g2325 Lcy-Chr1:36285431 Lcy4g1289 Lcy-Chr4:29836027 6.44E-18 wgd
Lcy1g2325 Lcy-Chr1:36285431 Lcy9g0885 Lcy-Chr9:29631283 9.71E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g2325 - - - 0.0