Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g2340 ATGTACTCCACGAGTGATAAGATGGGAAAGGAAAATTTGCTGCAGAGAGTAGATGACAACGCTGAAGCCAATGGTTGTTCAACTATCGGGAACGAAGATTTGGGTTCTCAGTCTCGCCATAGTGTAGGCAGGGAATCTGGGGCAAGTTGTCGTGTATGCCAATGTACTGAATCTGACAGAAGGGGTGATGCTGTTTTAGGATTTCTGGGCATTACTCCTCCGATAATGGAAGCAAGAAAAAGTGATGGGGATTCTAAGCCTGAGAAGCAAAGTGTAGAAAATGTTGATGGTTGTTCTGTGCTGAAAAAAACTGTTAAAAGGGATTCTGGTTCAATTGAGTTCATAGGCCCTAATGGGGAGGTTTTCGTTTGCAAAGGTGATATTGAAATGGGTTCATGTCACCATGAAGATGCATTAGTGGAGCTTGGCTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTATTGCGGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAGGAATATGAAGCTTTAAGGGAAAGAACTGCTAGTGGGGAACCTAATCCTATGCAGACTCATGCTAGTGCCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCCGGCAGCGGCTTAGCGAAATCTCGTTGTGGTTTAGTCCTCATAATTATAGTAGCAACAATAACTCTACTGTAGCATCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTTCATGCCGAGAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACTGGACTGCTTACTGTTACACTTGCTTGCCTAATAGCTCCTCGTGTGGGGAAGGGGAAAGGATCCCAATCCAGTGGGAGGGCGACAGCGGGAGAATGGTGCTTCAAAATTGCTAGGAAAAAGGACAGAGGTAGAATCAGTGGCATTGTGACTCACTGTCCTTGTTGCAAAGGGTGCACCAACCTGGGGATAAATAAGGCCATGGAAGGTAGGCGACCCTGTAGCTTGTGTAGTACCAAGAATAATGTTGATACTTTGGGTTTGTTTAGGGGTATAGTCGGCCTGCTGCAGTTTCCTCCTATGCCAGCAGAGTGCTACCCAAAGTATAGGCCTTACTTCGTTGCCCCATTTTGA 1215 45.27 MYSTSDKMGKENLLQRVDDNAEANGCSTIGNEDLGSQSRHSVGRESGASCRVCQCTESDRRGDAVLGFLGITPPIMEARKSDGDSKPEKQSVENVDGCSVLKKTVKRDSGSIEFIGPNGEVFVCKGDIEMGSCHHEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERTASGEPNPMQTHASADIDPDAVAAVRRQRLSEISLWFSPHNYSSNNNSTVASQVVSEHLNTISENVVHAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKGKGSQSSGRATAGEWCFKIARKKDRGRISGIVTHCPCCKGCTNLGINKAMEGRRPCSLCSTKNNVDTLGLFRGIVGLLQFPPMPAECYPKYRPYFVAPF 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36522417 36527521 - Maker00020479 Lcy1g2340 624252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g2340 404 ProSiteProfiles Zinc finger RING-CH-type profile. 116 180 IPR011016 GO:0008270(InterPro)
Lcy1g2340 404 PANTHER ZINC FINGER, RING-CH-TYPE 42 299 - -
Lcy1g2340 404 Pfam RING-variant domain 136 173 IPR011016 GO:0008270(InterPro)
Lcy1g2340 404 SMART ringv_2 133 174 IPR011016 GO:0008270(InterPro)
Lcy1g2340 404 SUPERFAMILY RING/U-box 137 175 - -
Lcy1g2340 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 176 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2340 Lcy-Chr1:36522417 Lcy5g0151 Lcy-Chr5:1548651 1.73E-08 dispersed
Lcy1g2340 Lcy-Chr1:36522417 Lcy10g2219 Lcy-Chr10:46072880 9.06E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g2340 - - - 0.0