Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g2551 ATGACAGGTGCAATTGTTGGAGTTTTGGTTGCAGTGGTCTTCATTATAATTTTGGTTCTCGTAATTTTGTGGTGGAAAGGCTATCTTGGAAGGAAAAATGCACATCAGCAAGATCTGAAGGGTCAAAATCTGCCAATTGGTTCATTTACATTAAAGCAAATCACAACTGCAACAAATAACTTTGACCCTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGTATTCTTTTGGATGGTACCATGATTGCAGTGAAGCAACTTTCTACAAAGTCAAACCAAGGAAACCGTGAATTTGTGAATGAGATAGGCTTGATATCTTCTTTGAATCACCCACATCTAGTTAAGCTTTATGGATGTTGTATCGAAGCAGATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGTCTTGCTCAAGCACTCTTCGGACCTCAAGGATGTCAAATAACATTGGATTGGGCAACAAGGCAAAAGATTTGTATTGGTATAGCCAAAGGCTTGGCTTTTCTTCACGAGGAGTCAAGATTGAAGATAGTGCACCGAGATATCAAAGGTTCTAATATATTGTTAGATAAAAATCTCCACCCAAAGATATCAGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAAAATACTCACATAAGCACTCGAATTGCTGGAACATTTGGATATATGGCGCCAGAATATGCAACACGAGGCTACTTAACAGATAAAGCTGATGTTTATAGTTTTGGTATCGTGGCATTAGAAATAGTAAGTGGAAGGAGCAACAATATGTGCCGAGGAAAGGATAAGTGTCTTTATCTCATTGATTGGGCACTTGTCTTGAAGGAGAAAGGAAGTTTAATGGAGCTGGTGGATCCAAAGTTGGGGTCCAGCTTCAAACAAGAAGAGGCAATGGCAATGATCAAAATTGCTTTCCTCTGCACCAATGTCTCTCCCTCAGCAAGACCAACCATGTCCTCTGTGGTGAGCATGTTGGAAGGTAAAGTTGGTGTGAAGGAGGTGGACGTTCCAAATGCAGACGACAATGACATGGTAGAAGAGATGAGTGCAATGTGGAGTCTTATCCAGCAGCAGGAGGAAATAACCAACAAGGAAAACAAGTCAAAAAGTGCATCACTTGTGGACATAGGATCTACCAGTTCTTCGACTTCGACATCCATTAAGAGTAAAACTAGACTCTAG 1203 39.98 MTGAIVGVLVAVVFIIILVLVILWWKGYLGRKNAHQQDLKGQNLPIGSFTLKQITTATNNFDPSNKIGEGGFGPVYKGILLDGTMIAVKQLSTKSNQGNREFVNEIGLISSLNHPHLVKLYGCCIEADQLLLVYEYMENNSLAQALFGPQGCQITLDWATRQKICIGIAKGLAFLHEESRLKIVHRDIKGSNILLDKNLHPKISDFGLAKLDEEENTHISTRIAGTFGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNNMCRGKDKCLYLIDWALVLKEKGSLMELVDPKLGSSFKQEEAMAMIKIAFLCTNVSPSARPTMSSVVSMLEGKVGVKEVDVPNADDNDMVEEMSAMWSLIQQQEEITNKENKSKSASLVDIGSTSSSTSTSIKSKTRL 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46483928 46486656 - Maker00019176 Lcy1g2551 624463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g2551 400 Gene3D Transferase(Phosphotransferase) domain 1 137 381 - -
Lcy1g2551 400 MobiDBLite consensus disorder prediction 370 400 - -
Lcy1g2551 400 Pfam Protein kinase domain 64 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g2551 400 CDD STKc_IRAK 67 334 - -
Lcy1g2551 400 SMART serkin_6 61 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g2551 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g2551 400 Gene3D Phosphorylase Kinase; domain 1 28 136 - -
Lcy1g2551 400 SUPERFAMILY Protein kinase-like (PK-like) 43 333 IPR011009 -
Lcy1g2551 400 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 30 136 - -
Lcy1g2551 400 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 352 IPR051824 -
Lcy1g2551 400 FunFam Putative LRR receptor-like serine/threonine-protein kinase 137 344 - -
Lcy1g2551 400 ProSiteProfiles Protein kinase domain profile. 61 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2551 Lcy-Chr1:46483928 Lcy9g1392 Lcy-Chr9:38928900 1.11E-219 dispersed
Lcy5g0826 Lcy-Chr5:13086591 Lcy1g2551 Lcy-Chr1:46483928 1.47E-14 dispersed
Lcy1g1936 Lcy-Chr1:22990893 Lcy1g2551 Lcy-Chr1:46483928 1.31E-41 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy11g1159 Lcy-Chr11:33979585 4.09E-51 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy2g1534 Lcy-Chr2:20265714 2.78E-59 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy3g0145 Lcy-Chr3:3627101 3.12E-53 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy3g0415 Lcy-Chr3:13866247 3.11E-56 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy3g0133 Lcy-Chr3:3385088 1.66E-62 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy4g1019 Lcy-Chr4:18273942 3.19E-24 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy6g1627 Lcy-Chr6:29573455 3.68E-161 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy6g1266 Lcy-Chr6:15602742 1.47E-71 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy6g1252 Lcy-Chr6:15124161 1.79E-84 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy6g1411 Lcy-Chr6:20994050 1.08E-80 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy7g1441 Lcy-Chr7:24257963 2.12E-62 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy8g0911 Lcy-Chr8:32722906 3.02E-11 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy8g0576 Lcy-Chr8:19645572 1.15E-31 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy8g0576 Lcy-Chr8:19645572 1.15E-31 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy8g0871 Lcy-Chr8:31362984 1.02E-63 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy8g0109 Lcy-Chr8:2555692 6.84E-68 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy9g0416 Lcy-Chr9:11658724 1.23E-231 wgd
Lcy1g2551 Lcy-Chr1:46483928 Lcy9g0903 Lcy-Chr9:30329421 8.85E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65691 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g2551 - - - 0.0