Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g2770 ATGTCGATGTCGATGTCGATGCCAATGTCGATACGTTTAGTTAGTGTTTTCTTGTTGGTGGGCTTCAGTTTGAGGTTTAGAACCGTAAATGGGTTGAGTATGGGGTATTACTTGATGAGCTGCCCGTTTGTAGATCCGATTGTGAAGAACACTGTGAACAGAGCTCTTCAGAACGATCCCACTCTAGCTGCGGCTCTCATTCGAATGCATTTTCATGACTGTTTTGTTGAAGGGTGTGATGCGTCGGTGTTGATTGATTCAACACGTGACAACACGGCAGAAAAGGACTCTCCTGCCAACCTCAGCTTACGAGGTTACGAGCTTATTGATGACATTAAGGAGCAACTAGAGAACCAATGTCCTGGTGTTGTTTCTTGTGCTGACATTATCGCTATGGCTGCCAGAGATGCAGTCTTTTGGGCTGGAGGTCCGTTTTACGAGATACCGAAGGGAAGGAAGGACGGAACGAGGTCTAGAATCGAAGACACCGCGAATTTGCCTTCGCCTTTCTTCAATGCATCTCAGCTTATTAATACCTTCGCTCAACGTGGCTTTACTGTTCAGCAAATGGTCGCACTTTCAGGTAAAATACATCCTCTACATTTACCATCAAACCTGAAATTTACTTCCAATTTACTTCTAAGTAATTTCAAATTTGGGAAAAATACACTTTTGGTCCCTGAGCTCACGAACTCAACCAACGCCACGCCGCCGTTAAGGTTGAACCGCACGTCAGATCTGGAACACCACGCGCGTCGTCGAGCTGGAATCACGCTCGTGAGTGCACATACATTGGGAGTGGCAAGATGCATATCCTTCAAAGGCAGGCTCAACGGCGACGATCCCCTTCTGAGTCCCAACTTCGGGAGAACGCTGTCAAGAACATGCAGCAATGGCGACAACGCAATACAAACGTTCGACGCGACAGCCGATAGCTTCGACAATGTCTATTACAACGCGCTGTCGAGAGGCGCCGGAGTTCTCTTTTCGGACCAGACCTTGTACGCTAGCCCACGGACAAGGGGTATCGTCAATGCCTACGCCATGAACCAAGCGCTGTTCTTCTTGGAGTTTCAACAAGCCTTCATCAAAATGGGGTTGCTCGATGTCAAGGAAGGCTATAGAGGCCAAGTCCGCCGCAACTGCCGTAGGGTTAATTGA 1161 48.15 MSMSMSMPMSIRLVSVFLLVGFSLRFRTVNGLSMGYYLMSCPFVDPIVKNTVNRALQNDPTLAAALIRMHFHDCFVEGCDASVLIDSTRDNTAEKDSPANLSLRGYELIDDIKEQLENQCPGVVSCADIIAMAARDAVFWAGGPFYEIPKGRKDGTRSRIEDTANLPSPFFNASQLINTFAQRGFTVQQMVALSGKIHPLHLPSNLKFTSNLLLSNFKFGKNTLLVPELTNSTNATPPLRLNRTSDLEHHARRRAGITLVSAHTLGVARCISFKGRLNGDDPLLSPNFGRTLSRTCSNGDNAIQTFDATADSFDNVYYNALSRGAGVLFSDQTLYASPRTRGIVNAYAMNQALFFLEFQQAFIKMGLLDVKEGYRGQVRRNCRRVN 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55188595 55193830 - Maker00006682 Lcy1g2770 624682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g2770 386 Gene3D - 366 386 - -
Lcy1g2770 386 ProSiteProfiles Plant heme peroxidase family profile. 31 386 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 Gene3D Peroxidase, domain 2 167 196 - -
Lcy1g2770 386 FunFam Peroxidase 35 170 - -
Lcy1g2770 386 Gene3D - 35 166 - -
Lcy1g2770 386 PANTHER PEROXIDASE 25-RELATED 26 382 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lcy1g2770 386 Pfam Peroxidase 257 349 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 Pfam Peroxidase 48 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 CDD secretory_peroxidase 31 385 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy1g2770 386 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 PRINTS Haem peroxidase superfamily signature 306 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601(InterPro)
Lcy1g2770 386 SUPERFAMILY Heme-dependent peroxidases 216 386 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 SUPERFAMILY Heme-dependent peroxidases 31 195 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 Gene3D Peroxidase, domain 2 257 365 - -
Lcy1g2770 386 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g2770 386 PRINTS Plant peroxidase signature 269 286 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2770 Lcy-Chr1:55188595 Lcy6g0205 Lcy-Chr6:1839494 1.11E-76 dispersed
Lcy1g2770 Lcy-Chr1:55188595 Lcy13g1893 Lcy-Chr13:37882265 9.16E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g2770 K00430 - csv:101202852 466.848