Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g2796 ATGACCGTAATCGACATCATCTTCCGAGTCGATTCTATCTGCAAGAAATACGAGAAGTATGATGTCGAGAAACAGCGCGAGCTCAATGCTTATGGCGACGATGTCTTTGCTCGCCTCTTCGCCGCCGTTGAGGCCGAAATCGACGCCGCTCTCCAGAAATCGGAGGCTGCCTCGACCGAGAAGAATAGGGCTGCTGCAGTTGCCATGAACGCCGAGGTTCGGCGGAAGAAGGCCCGATTGATGGATGAAGTGCCTAAGCTTCGTAAATTGGCTCACAAGAAGGTTAAAGGGGTTCCGAAAGAAGAGCTTGCGGTCAGAGATGATCTTGTTCTTGGGCTCGAGGAGAGGATCAAAGCGATTCCAGATGGGAGTACCTCCGCAGGCAAACAATCTGGAGGATGGGCCTCCTCCTCCTCATCGAACAACATCAAATTTGACTCAACATCAGATGGAAACTTTGAGAGCGAGTATTTCCAGCAGAGTGAAGAATCAAGTCAATTTCGACAGGAGTATGAAATGCGGAAGATGAAACAGGCATGTGAGTTTCTTTACCAATTTTCTGCAACCAAAATTACTTTTAAGCTCATGTTAGATTGTAGGCTCGACCAAGGGCTCGATATCATATCTGAAGGGTTGGATATGCTGAAAAATCTGGCCCATGATATGAATGAGGAATTGGACAGGCAAGTTCCATTAATTGACGAGATCGACGCAAAGGTTGACAAGGTGACTAATGAGATTAAAAATACCAATGTTAGGCTCAAGGAAACACTCTATGAGGTGAGATCCAGTCAAAACTTCTGCATTGATATCATTCTTCTCTGTGTAATTCTTGGAATCGCTTCTTACTTATACAAGTAA 861 45.53 MTVIDIIFRVDSICKKYEKYDVEKQRELNAYGDDVFARLFAAVEAEIDAALQKSEAASTEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELAVRDDLVLGLEERIKAIPDGSTSAGKQSGGWASSSSSNNIKFDSTSDGNFESEYFQQSEESSQFRQEYEMRKMKQACEFLYQFSATKITFKLMLDCRLDQGLDIISEGLDMLKNLAHDMNEELDRQVPLIDEIDAKVDKVTNEIKNTNVRLKETLYEVRSSQNFCIDIILLCVILGIASYLYK 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 55792880 55794721 + Maker00006792 Lcy1g2796 624708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g2796 286 PANTHER SYNTAXIN 25 275 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy1g2796 286 SUPERFAMILY SNARE fusion complex 200 255 - -
Lcy1g2796 286 Coils Coil 233 253 - -
Lcy1g2796 286 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 257 IPR000727 -
Lcy1g2796 286 MobiDBLite consensus disorder prediction 124 146 - -
Lcy1g2796 286 Gene3D - 197 256 - -
Lcy1g2796 286 FunFam Syntaxin 6 202 265 - -
Lcy1g2796 286 CDD SNARE_Qc 202 256 - -
Lcy1g2796 286 SMART tSNARE_6 190 257 IPR000727 -
Lcy1g2796 286 Pfam SNARE domain 232 281 IPR000727 -
Lcy1g2796 286 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2796 Lcy-Chr1:55792880 Lcy8g1893 Lcy-Chr8:45213700 1.47E-157 dispersed
Lcy1g2792 Lcy-Chr1:55746756 Lcy1g2796 Lcy-Chr1:55792880 3.55E-191 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g2796 K08506 - csv:101211289 421.009