Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g2796 | ATGACCGTAATCGACATCATCTTCCGAGTCGATTCTATCTGCAAGAAATACGAGAAGTATGATGTCGAGAAACAGCGCGAGCTCAATGCTTATGGCGACGATGTCTTTGCTCGCCTCTTCGCCGCCGTTGAGGCCGAAATCGACGCCGCTCTCCAGAAATCGGAGGCTGCCTCGACCGAGAAGAATAGGGCTGCTGCAGTTGCCATGAACGCCGAGGTTCGGCGGAAGAAGGCCCGATTGATGGATGAAGTGCCTAAGCTTCGTAAATTGGCTCACAAGAAGGTTAAAGGGGTTCCGAAAGAAGAGCTTGCGGTCAGAGATGATCTTGTTCTTGGGCTCGAGGAGAGGATCAAAGCGATTCCAGATGGGAGTACCTCCGCAGGCAAACAATCTGGAGGATGGGCCTCCTCCTCCTCATCGAACAACATCAAATTTGACTCAACATCAGATGGAAACTTTGAGAGCGAGTATTTCCAGCAGAGTGAAGAATCAAGTCAATTTCGACAGGAGTATGAAATGCGGAAGATGAAACAGGCATGTGAGTTTCTTTACCAATTTTCTGCAACCAAAATTACTTTTAAGCTCATGTTAGATTGTAGGCTCGACCAAGGGCTCGATATCATATCTGAAGGGTTGGATATGCTGAAAAATCTGGCCCATGATATGAATGAGGAATTGGACAGGCAAGTTCCATTAATTGACGAGATCGACGCAAAGGTTGACAAGGTGACTAATGAGATTAAAAATACCAATGTTAGGCTCAAGGAAACACTCTATGAGGTGAGATCCAGTCAAAACTTCTGCATTGATATCATTCTTCTCTGTGTAATTCTTGGAATCGCTTCTTACTTATACAAGTAA | 861 | 45.53 | MTVIDIIFRVDSICKKYEKYDVEKQRELNAYGDDVFARLFAAVEAEIDAALQKSEAASTEKNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELAVRDDLVLGLEERIKAIPDGSTSAGKQSGGWASSSSSNNIKFDSTSDGNFESEYFQQSEESSQFRQEYEMRKMKQACEFLYQFSATKITFKLMLDCRLDQGLDIISEGLDMLKNLAHDMNEELDRQVPLIDEIDAKVDKVTNEIKNTNVRLKETLYEVRSSQNFCIDIILLCVILGIASYLYK | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 55792880 | 55794721 | + | Maker00006792 | Lcy1g2796 | 624708 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g2796 | 286 | PANTHER | SYNTAXIN | 25 | 275 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Lcy1g2796 | 286 | SUPERFAMILY | SNARE fusion complex | 200 | 255 | - | - | |
Lcy1g2796 | 286 | Coils | Coil | 233 | 253 | - | - | |
Lcy1g2796 | 286 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 202 | 257 | IPR000727 | - | |
Lcy1g2796 | 286 | MobiDBLite | consensus disorder prediction | 124 | 146 | - | - | |
Lcy1g2796 | 286 | Gene3D | - | 197 | 256 | - | - | |
Lcy1g2796 | 286 | FunFam | Syntaxin 6 | 202 | 265 | - | - | |
Lcy1g2796 | 286 | CDD | SNARE_Qc | 202 | 256 | - | - | |
Lcy1g2796 | 286 | SMART | tSNARE_6 | 190 | 257 | IPR000727 | - | |
Lcy1g2796 | 286 | Pfam | SNARE domain | 232 | 281 | IPR000727 | - | |
Lcy1g2796 | 286 | MobiDBLite | consensus disorder prediction | 122 | 146 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g2796 | Lcy-Chr1:55792880 | Lcy8g1893 | Lcy-Chr8:45213700 | 1.47E-157 | dispersed | |
Lcy1g2792 | Lcy-Chr1:55746756 | Lcy1g2796 | Lcy-Chr1:55792880 | 3.55E-191 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g2796 | K08506 | - | csv:101211289 | 421.009 |