Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0007 ATGCAACACCATAGAGATAGGGTTAAGTTGGTACTTGAAATACATACAAAACAACCACCTCCCTGCACTGCACAGCGCAGCGCAGCAGACAGCACTGCCCATATTTTATATTTATATCGGCTGCGCCAGAGCCACCTAGTTAGTTATGCAAACGCTGTTGAAGAAGTTGCTGAGTTTCTGAGGATGTCCCTTCCAACCCACCCCTTGCTCTTGTTTTCTTTCTCTGTGGCCTCTTGTCTCCTGAGTCCTGTTGAGTTGAGATTTGAGACCCCAGGCCCAAGCAAAGGAAGGTCGCAAAAGGGGCGACAGGTTGCATTGTTTGTAGTCGTGTACCCTACACATACACATATACACAAACACATACACTACGCTAGCACTAGCGTTAGCACTAAATATCCAATTCCGCAAATGGATCCAGAAGCCCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATCGTGGGGGGAGGCGGCGGTGCACCTCTCCCAGCACCACTACCGCCCTACTCGCTGCGGCCCAGGGAGTTGGGACTGGGAGGCCTGGAGGACTTGTTCCAGGCTTACGGTATCAGGTACTACACCGCCGCTAAAATTGCGGAACTCGGTTTCACCGTCAGCACCCTCCTGGACATGAAAGATGAAGAGTTGGAGGACATGATGAACAGCCTCTCTCACATTTTCCGCTGGGAGCTTCTGGTCGGTGAGAGGTACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTCTAGATGACGAGATCGACTCCTCAAGGCGCCGTCACGTCTTGTCCAACGACACCACTACCAACGTAGTCCTCGATGCCCTTTCTCAGGAAGGGCTATCGGAAGAGCCGGTGCAGCAGGAGAAGGAGGTGGTGGGGAGCGGAGGAGGAGGAACGTGGGAGGCAGTTGCAGCGGCTGAAATCAGGAAGAAGCAGCGGAGGAGAAATGGATCAAAGAAGAAGCAGGTGATGGTGATGGAGGAGGATCACGATGAAAACGAGGGAGCTGGGGACGAGGAGGATATTATGGAAGTCAGCGAGAGACAGCGAGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGGAAAAAGAACGGCCTGGACTATCTCTTCCACCTCTATGAGCAGTGTCGTGAATTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGCCCTACGAAGGTGACGAACCAGGTGTTTAGATATGCGAAGAAAGCGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGCTATGCCCTGCATTGTCTGGACGAGGAAGCGTCAAACGCACTGAGGAGGGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTCTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATTTGGTATGTGCCTACCAAACTCCGACAACTCTGCCACACCGAGCGCAACAGTGCCACAGCCTCCACCGCGGCTGCCGCCGATCACTTGCCTTTTTAA 1566 52.75 MQHHRDRVKLVLEIHTKQPPPCTAQRSAADSTAHILYLYRLRQSHLVSYANAVEEVAEFLRMSLPTHPLLLFSFSVASCLLSPVELRFETPGPSKGRSQKGRQVALFVVVYPTHTHIHKHIHYASTSVSTKYPIPQMDPEALSATLFKWDPRGIVGGGGGAPLPAPLPPYSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWELLVGERYGIKAAVRAERRRLDDEIDSSRRRHVLSNDTTTNVVLDALSQEGLSEEPVQQEKEVVGSGGGGTWEAVAAAEIRKKQRRRNGSKKKQVMVMEEDHDENEGAGDEEDIMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHTERNSATASTAAAADHLPF 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 72624 75392 + Maker00007471 Lcy2g0007 624772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0007 521 MobiDBLite consensus disorder prediction 313 341 - -
Lcy2g0007 521 Coils Coil 241 261 - -
Lcy2g0007 521 Gene3D Protein LEAFY 347 515 IPR038276 -
Lcy2g0007 521 PANTHER PROTEIN LEAFY 137 515 IPR002910 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy2g0007 521 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 347 509 IPR035209 GO:0003677(InterPro)
Lcy2g0007 521 Pfam Floricaula / Leafy protein SAM domain 179 254 IPR035079 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0007 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0007 . 137 514 Orphan Transcription Factor Family AT5G61850 69.3 3.9e-125 445.7
Lcy3g1220 . 101 267 Orphan Transcription Factor Family AT1G06040 68.4 6.3e-61 231.1
Lcy6g0640 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.5e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19659 None None None None Lcy TF