Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0008 ATGGCGCAGGTTTCTCAGCTGCCTTGCGACGGCGATGGCATTTGCATGCTCTGCCAGGCCAAGCCTTCCGACTTGGAGACGATCACTTGCAAAACTTGCGTCACTCCGTGGCACGTCGGTTGTCTCTCAAATCCCCCTGAAACTCTGGCATCTACCCTTCAATGGGACTGTCCCGACTGTTCCCCCCCTCGCGAAGATGCTCCCCTTCCTCCACCCGGCAACTCTCCACTCCCCACTGCGCCTTCCAGTGACCTGGTTGCTGCGATTCGAGCCATTGAGGCCGATGCCTCCCTTACTGACCGCGAGAAGGCAAAGAAGCGCCAGGAGCTTCTTAGCGGAAAGTCTCAGTCCGAGAAGGATGATCATGATGCCAACAAGGAAAAGAGAAAAAGAGGGGACGATGTTTTGGATTTGTTCGACGAGAGATTGAACTGCTCCTTCTGCATGCAGTTACCAGAAAGGCCAGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAAAACACTTGTGCAAAGTGCCGCTGTGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAATTCCACCCTTGTAGTGGCCATTCGTATGGCTAAAATGTCAAAATCCATTGGTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGACCGGGCACAGAAAAAAGGGAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCCGATCATTTTGGTCCAATTCCTGCTGAAAATGACCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGGCAATGGGGTGCTCACTTTCCACATGTTGCAGGTATAGCAGGCCAGTCAAATAATGGTGCTCAATCAGTGGTTCTTTCTGGTGGCTACCAGGATGACGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGGGGTCGAGACCTTAGTGGGAACAAACGTACGAGCAAGGATCAGTCTTTTGACCAGAAGTTTGAAAAATCAAACAAAGCCCTACAAGTTAGTTGCTTGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAGAAGCGTTCCTCGTATGCTCCAGAGAAGGGTTTGCGGTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGGTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGGTTTGTGTTTCCCAATAATGTAATTGCTTTTGTGTTATCAAATGCTAGTTGCAGTCTCTGGCTTTGCCTCCAAAGCTTTTTCCTTTCATTAAACAAGTTATTTAACTACAGCGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTCCAGAGTTAAAAAAGGCCACAGATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGATAGTCGGTGGAAGTGGAGCAAAGCCCCACCAACGAGCAAGAAACCAGTTGAAACCGAAGATTCTGCTTCTGGGAAAAGGTCAAGGAGAAGAATTAGGCAATCGCATAATATGAGTGTCCGAGAAAGGTTACTGAAAGAGTTTAGCTGCCTTATTTGTCGGGAGGTAATGAGTCTGCCAATCACTACGCCTTGTGCCCATAACTTTTGCAAGACATGCTTGGAAGGTGCTTTTGTGGGCAAGACATTCTTGAGAGAGAGAAGCAGTGGTGGACGGGCCCTTAGATCCCAAAAGAATGTCATGAGTTGTCCTTGTTGCCCGACAGATATATCTGATTTTCTACAGAATCTCCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCATTGAAAAGTAAGATTGAAGAAGGGGATGCATCATCTGAGAAGCTCTGTGAAGAAGAGATAGAAGGGGAAGAGGATGAGGAAGAGGAGGAGGGAAAAGATGGAAGCAGCAGTCCTGTGGAAACAAGAAAGCGAGCAAAGGCGGTGGTTAATGGTGGGGAGGAAAATGCTGTGGCCGGGAATGGAGATGATTCACCCTCAAGTCCCCTCCACGTGGATGATTTGGAATGA 2127 46.97 MAQVSQLPCDGDGICMLCQAKPSDLETITCKTCVTPWHVGCLSNPPETLASTLQWDCPDCSPPREDAPLPPPGNSPLPTAPSSDLVAAIRAIEADASLTDREKAKKRQELLSGKSQSEKDDHDANKEKRKRGDDVLDLFDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKMSKSIGSGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTRFVFPNNVIAFVLSNASCSLWLCLQSFFLSLNKLFNYSDEHGDRPRPLPAIPELKKATDITERKEGPSWDFDEKDSRWKWSKAPPTSKKPVETEDSASGKRSRRRIRQSHNMSVRERLLKEFSCLICREVMSLPITTPCAHNFCKTCLEGAFVGKTFLRERSSGGRALRSQKNVMSCPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEGDASSEKLCEEEIEGEEDEEEEEGKDGSSSPVETRKRAKAVVNGGEENAVAGNGDDSPSSPLHVDDLE 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 82450 90977 + Maker00007450 Lcy2g0008 624773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0008 708 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Lcy2g0008 708 SUPERFAMILY RING/U-box 136 191 - -
Lcy2g0008 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 662 IPR045134 GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Lcy2g0008 708 SUPERFAMILY FYVE/PHD zinc finger 7 66 IPR011011 -
Lcy2g0008 708 MobiDBLite consensus disorder prediction 61 82 - -
Lcy2g0008 708 ProSitePatterns Zinc finger RING-type signature. 569 578 IPR017907 -
Lcy2g0008 708 MobiDBLite consensus disorder prediction 99 129 - -
Lcy2g0008 708 Pfam SAD/SRA domain 275 424 IPR003105 -
Lcy2g0008 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 70 IPR013083 -
Lcy2g0008 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 507 642 IPR013083 -
Lcy2g0008 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 212 IPR013083 -
Lcy2g0008 708 ProSiteProfiles YDG domain profile. 273 421 IPR003105 -
Lcy2g0008 708 SMART G9a_1 268 425 IPR003105 -
Lcy2g0008 708 Gene3D - 244 435 IPR036987 -
Lcy2g0008 708 Pfam Zinc finger, C3HC4 type (RING finger) 145 183 IPR018957 GO:0046872(InterPro)
Lcy2g0008 708 Pfam RING-type zinc-finger 554 583 IPR027370 -
Lcy2g0008 708 MobiDBLite consensus disorder prediction 495 512 - -
Lcy2g0008 708 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 91 212 - -
Lcy2g0008 708 ProSiteProfiles Zinc finger RING-type profile. 145 184 IPR001841 -
Lcy2g0008 708 ProSiteProfiles Zinc finger RING-type profile. 554 610 IPR001841 -
Lcy2g0008 708 SMART PHD_3 14 61 IPR001965 -
Lcy2g0008 708 SUPERFAMILY RING/U-box 547 635 - -
Lcy2g0008 708 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 244 436 - -
Lcy2g0008 708 MobiDBLite consensus disorder prediction 63 78 - -
Lcy2g0008 708 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Lcy2g0008 708 MobiDBLite consensus disorder prediction 645 666 - -
Lcy2g0008 708 MobiDBLite consensus disorder prediction 642 708 - -
Lcy2g0008 708 SUPERFAMILY PUA domain-like 247 435 IPR015947 -
Lcy2g0008 708 CDD RING-HC_ORTHRUS_rpt1 141 188 IPR047498 -
Lcy2g0008 708 MobiDBLite consensus disorder prediction 495 537 - -
Lcy2g0008 708 SMART ring_2 145 183 IPR001841 -
Lcy2g0008 708 SMART ring_2 554 610 IPR001841 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0008 K10638 - csv:101219001 1147.88