Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0009 ATGGCTAATGGGGATAGGGTAGGAATAGGTTGTAGTGTAGAGAGAAACCCTATCCATGCTCGTCTTTTTGCATTGAAAAGAAGAAGCAAGGTCGAAAAAGTGGATCCGAAGCATGGGAAGAGGCCCTTTTCTTCCGATGAATCGGAGGAAGAAAACCCGTTCCCGATCTACTCGGCTAGATCTCAACATGACATGTCGGCCATGGTTTCTGCGCTAGCTCAAGTGATAACGAGTGGCAGTAGAAGCCCAGTAGAAGCAAATAATCCTACAACTACAACAACAACAACAACATGGGCGCAACCGCAAGCAGCAGCAGATCATGAAGAACAATCCACCAGCAGGACGATGATGAGAAGACATTATCGAGGAGTGAGGCAGAGACCGTGGGGGAAATGGGCAGCTGAGATTCGTGACCCGAAAAAAGCAGCAAGAGTGTGGCTGGGCACCTTCGACACTGCGGAGGCAGCGGCACTTGCTTACGATGAGGCCGCCCTCAGATTCAAAGGAACCAAAGCCAAGCTCAACTTCCCAGAGAGGCTAGTCCAACCACCTACACCTCTCCACTATGCGCCACTTCATAATCATAATGTACACTTACAGTACACCACCCCATATAATAATCCCTTTATCTTCAATCACCAGACTTCATCATCCTCCGCAACTTCTGATCCCGACTCCCAACTTCCTTCTCCTTCTCAGGATCACAAACACCACATTTAG 720 48.75 MANGDRVGIGCSVERNPIHARLFALKRRSKVEKVDPKHGKRPFSSDESEEENPFPIYSARSQHDMSAMVSALAQVITSGSRSPVEANNPTTTTTTTTWAQPQAAADHEEQSTSRTMMRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLVQPPTPLHYAPLHNHNVHLQYTTPYNNPFIFNHQTSSSSATSDPDSQLPSPSQDHKHHI 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 91963 93288 - Maker00007597 Lcy2g0009 624774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0009 239 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0009 239 MobiDBLite consensus disorder prediction 30 48 - -
Lcy2g0009 239 PANTHER DNA-BINDING DOMAIN 70 225 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lcy2g0009 239 Gene3D AP2/ERF domain 119 179 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0009 239 MobiDBLite consensus disorder prediction 210 239 - -
Lcy2g0009 239 SMART rav1_2 120 183 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0009 239 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677(InterPro)
Lcy2g0009 239 MobiDBLite consensus disorder prediction 78 122 - -
Lcy2g0009 239 MobiDBLite consensus disorder prediction 210 229 - -
Lcy2g0009 239 MobiDBLite consensus disorder prediction 30 52 - -
Lcy2g0009 239 MobiDBLite consensus disorder prediction 78 110 - -
Lcy2g0009 239 Pfam AP2 domain 120 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0009 239 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0009 239 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0009 239 FunFam Ethylene-responsive transcription factor 2 119 178 - -
Lcy2g0009 239 CDD AP2 120 178 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0009 Lcy-Chr2:91963 Lcy9g0587 Lcy-Chr9:19221192 1.11E-30 dispersed
Lcy2g0009 Lcy-Chr2:91963 Lcy3g1470 Lcy-Chr3:41474652 1.60E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19660 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0009 - - - 0.0