Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0009 | ATGGCTAATGGGGATAGGGTAGGAATAGGTTGTAGTGTAGAGAGAAACCCTATCCATGCTCGTCTTTTTGCATTGAAAAGAAGAAGCAAGGTCGAAAAAGTGGATCCGAAGCATGGGAAGAGGCCCTTTTCTTCCGATGAATCGGAGGAAGAAAACCCGTTCCCGATCTACTCGGCTAGATCTCAACATGACATGTCGGCCATGGTTTCTGCGCTAGCTCAAGTGATAACGAGTGGCAGTAGAAGCCCAGTAGAAGCAAATAATCCTACAACTACAACAACAACAACAACATGGGCGCAACCGCAAGCAGCAGCAGATCATGAAGAACAATCCACCAGCAGGACGATGATGAGAAGACATTATCGAGGAGTGAGGCAGAGACCGTGGGGGAAATGGGCAGCTGAGATTCGTGACCCGAAAAAAGCAGCAAGAGTGTGGCTGGGCACCTTCGACACTGCGGAGGCAGCGGCACTTGCTTACGATGAGGCCGCCCTCAGATTCAAAGGAACCAAAGCCAAGCTCAACTTCCCAGAGAGGCTAGTCCAACCACCTACACCTCTCCACTATGCGCCACTTCATAATCATAATGTACACTTACAGTACACCACCCCATATAATAATCCCTTTATCTTCAATCACCAGACTTCATCATCCTCCGCAACTTCTGATCCCGACTCCCAACTTCCTTCTCCTTCTCAGGATCACAAACACCACATTTAG | 720 | 48.75 | MANGDRVGIGCSVERNPIHARLFALKRRSKVEKVDPKHGKRPFSSDESEEENPFPIYSARSQHDMSAMVSALAQVITSGSRSPVEANNPTTTTTTTTWAQPQAAADHEEQSTSRTMMRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLVQPPTPLHYAPLHNHNVHLQYTTPYNNPFIFNHQTSSSSATSDPDSQLPSPSQDHKHHI | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 91963 | 93288 | - | Maker00007597 | Lcy2g0009 | 624774 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0009 | 239 | ProSiteProfiles | AP2/ERF domain profile. | 120 | 177 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0009 | 239 | MobiDBLite | consensus disorder prediction | 30 | 48 | - | - | |
Lcy2g0009 | 239 | PANTHER | DNA-BINDING DOMAIN | 70 | 225 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Lcy2g0009 | 239 | Gene3D | AP2/ERF domain | 119 | 179 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0009 | 239 | MobiDBLite | consensus disorder prediction | 210 | 239 | - | - | |
Lcy2g0009 | 239 | SMART | rav1_2 | 120 | 183 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0009 | 239 | SUPERFAMILY | DNA-binding domain | 120 | 178 | IPR016177 | GO:0003677(InterPro) | |
Lcy2g0009 | 239 | MobiDBLite | consensus disorder prediction | 78 | 122 | - | - | |
Lcy2g0009 | 239 | MobiDBLite | consensus disorder prediction | 210 | 229 | - | - | |
Lcy2g0009 | 239 | MobiDBLite | consensus disorder prediction | 30 | 52 | - | - | |
Lcy2g0009 | 239 | MobiDBLite | consensus disorder prediction | 78 | 110 | - | - | |
Lcy2g0009 | 239 | Pfam | AP2 domain | 120 | 169 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0009 | 239 | PRINTS | Ethylene responsive element binding protein signature | 121 | 132 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0009 | 239 | PRINTS | Ethylene responsive element binding protein signature | 143 | 159 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0009 | 239 | FunFam | Ethylene-responsive transcription factor 2 | 119 | 178 | - | - | |
Lcy2g0009 | 239 | CDD | AP2 | 120 | 178 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0009 | Lcy-Chr2:91963 | Lcy9g0587 | Lcy-Chr9:19221192 | 1.11E-30 | dispersed | |
Lcy2g0009 | Lcy-Chr2:91963 | Lcy3g1470 | Lcy-Chr3:41474652 | 1.60E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19660 | None | None | None | None | Lcy | TF |
Pathway information
