Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0013 ATGGCCTCCTCCGAGGTTTCCATCAAGCCCAATTCCGCCTCCACTAAAGACCCCTCTGATCCACCCAACACTCTCTCTGCCAGGGATGCCGATATCGCCCTCTACACCGAGCTCTGGAATGCTTGCGCCGGTCCTCTCGTTTCTGTCCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACCAATCAATTGGCGGATCAACAGATGCCTGTTTATAACCTTCCATCCAAGATCCTCTGCCGCGTTATTAATGTGCACTTGAAGGCCGAGCCTGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGGATGCTGTGGACAAGGAACCCCCTCCTCCTCCCCCACGGAGATTTCACGTGCATTCGTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGAGGGTTTTCGGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAACCTCCTACCCAGGAGTTGGTTGCAAAGGATTTGCATGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTTGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGTGTTGGTGTTAGGCGTGCCATGAGACAACATGGCAACGTCCCCTCTTCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCGACTGCTTGGCATGCCATTTCCACAGGCACGATGTTCACTGTCTACTATAAGCCTAGGACAAGCCCTTCTGAATTCATTGTTCCATATGATCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGATTCACGGGTACTATCATTGGATGTGAAGATGCTGATCCCAATAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAGACTTCAACTATTTCTCGACCGGAGAAAGTCTCACCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTGAACCCCCTTCCAATGACTAGAGCTAAAAGACCTCGATCGAACATGGTACCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATTGATGGCAATGAGTCTGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAGATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATTGCTGGATACCTCCAGGAAGGAGTGAGCCAACCTATGCAGATCTTTTGTCAGGGTTTGGAACTAATATTGATTCATCCCGTGGTGTCCGAACTGCCATGGGAGATCCAGCAGTAGTAACTGCTAATTCAATCAGAAAGCATGCAATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCCCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACCTGGTCGATTCTAGTCAGAAGGGCCATATTCAAGCTGGTGACTTACCTTATCAAGTGAGAGGAAATGCTACCTTTAATGGCTTTGGTGATCATTCCATGGTCCATTGTCATAGAATTGAGCAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGATTATCCAGTTCACTCAACTGAACTGATGTCAAAACCTGTGTTATTTCAGAACCAAGATATTCTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCATTAAAAATCCTGCTCTTCCAGACCCTACAGGATTGAATAGAAATATGATGAATGAGGCAGATGTTATGCATCCCAATATACATCAAATCCATTCGAACGAGTCTGACCTCAAGTCTGAACTATCTAGGGGTTCAAAGTTGGCTGATAAATCCCTTGCCATCAATGAGCCTGATAAGTCGCAGCAAACATGCACACAAAACTCGAAGGATCAGAGTAAATCACAGGGTGGTTCAACGAGGAGTTGTACAAAGGTTCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAAGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGCGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACTGATGATGAGGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTGATGAGAATCCATCTGTTGAAGATGAAGAAGCAAAAGAGATTAAAAGTCAGGCAGTACCTTCAATGTCAGCACCCGAGAGTTTTTGGTGCGGTATGAAAGGAGTTGAGCAGAGTAAATGCAACGAGGCCGGAAGGTTGCGGCCTTATGTTATAGTTGAGTCGGTGGTGTGCATCAGCCGGAATCTGCAAGAAAACGTCGAGATGATCGATCTGCATTCAGAAATATTTGCTGCCTTTTATGCGAATGCCAAGGGCAAGGCAGAGAAGAAGAGAGAACATGCTCACACCAGTCGAAAATTGTCTAAAGAGGGCTGA 2754 45.9 MASSEVSIKPNSASTKDPSDPPNTLSARDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTNQLADQQMPVYNLPSKILCRVINVHLKAEPDTDEVFAQITLLPEANQDEDAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPNRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRAKRPRSNMVPTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDGNESDAAEKSVMWPPSLDDEKIDVVSTSKKHGADCWIPPGRSEPTYADLLSGFGTNIDSSRGVRTAMGDPAVVTANSIRKHAMDQDGKFNFLGGSPWSVLPSGLSLNLVDSSQKGHIQAGDLPYQVRGNATFNGFGDHSMVHCHRIEQPHGNWLMPPPSSHFDYPVHSTELMSKPVLFQNQDILKPKDGNCKLFGISLIKNPALPDPTGLNRNMMNEADVMHPNIHQIHSNESDLKSELSRGSKLADKSLAINEPDKSQQTCTQNSKDQSKSQGGSTRSCTKVHKQGIALGRSVDLSKFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGDENPSVEDEEAKEIKSQAVPSMSAPESFWCGMKGVEQSKCNEAGRLRPYVIVESVVCISRNLQENVEMIDLHSEIFAAFYANAKGKAEKKREHAHTSRKLSKEG 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 133246 140968 + Maker00007474 Lcy2g0013 624778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0013 917 CDD B3_DNA 138 240 IPR003340 GO:0003677(InterPro)
Lcy2g0013 917 MobiDBLite consensus disorder prediction 691 717 - -
Lcy2g0013 917 FunFam Auxin response factor 711 805 - -
Lcy2g0013 917 ProSiteProfiles PB1 domain profile. 716 800 IPR053793 -
Lcy2g0013 917 SMART B3_2 140 242 IPR003340 GO:0003677(InterPro)
Lcy2g0013 917 Pfam AUX/IAA family 700 804 IPR033389 -
Lcy2g0013 917 Gene3D - 303 373 - -
Lcy2g0013 917 Gene3D - 137 242 IPR015300 -
Lcy2g0013 917 FunFam Auxin response factor 138 242 - -
Lcy2g0013 917 Pfam Auxin response factor 266 348 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy2g0013 917 MobiDBLite consensus disorder prediction 1 22 - -
Lcy2g0013 917 MobiDBLite consensus disorder prediction 389 414 - -
Lcy2g0013 917 SUPERFAMILY DNA-binding pseudobarrel domain 137 269 IPR015300 -
Lcy2g0013 917 Gene3D - 712 805 - -
Lcy2g0013 917 FunFam Auxin response factor 303 375 - -
Lcy2g0013 917 Pfam B3 DNA binding domain 140 241 IPR003340 GO:0003677(InterPro)
Lcy2g0013 917 MobiDBLite consensus disorder prediction 1 25 - -
Lcy2g0013 917 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 33 806 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy2g0013 917 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677(InterPro)
Lcy2g0013 917 MobiDBLite consensus disorder prediction 375 414 - -
Lcy2g0013 917 SUPERFAMILY CAD & PB1 domains 709 793 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0013 Lcy-Chr2:133246 Lcy6g0783 Lcy-Chr6:7804027 6.27E-188 dispersed
Lcy2g0013 Lcy-Chr2:133246 Lcy4g0845 Lcy-Chr4:11328680 5.24E-187 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19661 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0013 K14486 - csv:101206845 1562.36