Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0013 | ATGGCCTCCTCCGAGGTTTCCATCAAGCCCAATTCCGCCTCCACTAAAGACCCCTCTGATCCACCCAACACTCTCTCTGCCAGGGATGCCGATATCGCCCTCTACACCGAGCTCTGGAATGCTTGCGCCGGTCCTCTCGTTTCTGTCCCTCGCGAAAACGAGCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCAACCAATCAATTGGCGGATCAACAGATGCCTGTTTATAACCTTCCATCCAAGATCCTCTGCCGCGTTATTAATGTGCACTTGAAGGCCGAGCCTGACACTGATGAGGTATTTGCACAAATAACTTTGCTTCCAGAGGCTAATCAAGATGAGGATGCTGTGGACAAGGAACCCCCTCCTCCTCCCCCACGGAGATTTCACGTGCATTCGTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGAGGGTTTTCGGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAACCTCCTACCCAGGAGTTGGTTGCAAAGGATTTGCATGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTTGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGTGTTGGTGTTAGGCGTGCCATGAGACAACATGGCAACGTCCCCTCTTCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCGACTGCTTGGCATGCCATTTCCACAGGCACGATGTTCACTGTCTACTATAAGCCTAGGACAAGCCCTTCTGAATTCATTGTTCCATATGATCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGATTCACGGGTACTATCATTGGATGTGAAGATGCTGATCCCAATAGGTGGAAAGATTCCAAGTGGAGATGCCTGAAGGTGAGATGGGATGAGACTTCAACTATTTCTCGACCGGAGAAAGTCTCACCTTGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTGAACCCCCTTCCAATGACTAGAGCTAAAAGACCTCGATCGAACATGGTACCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGCCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTATTGATGGCAATGAGTCTGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAGATTGATGTGGTTTCTACGTCTAAGAAACATGGAGCAGATTGCTGGATACCTCCAGGAAGGAGTGAGCCAACCTATGCAGATCTTTTGTCAGGGTTTGGAACTAATATTGATTCATCCCGTGGTGTCCGAACTGCCATGGGAGATCCAGCAGTAGTAACTGCTAATTCAATCAGAAAGCATGCAATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCCCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACCTGGTCGATTCTAGTCAGAAGGGCCATATTCAAGCTGGTGACTTACCTTATCAAGTGAGAGGAAATGCTACCTTTAATGGCTTTGGTGATCATTCCATGGTCCATTGTCATAGAATTGAGCAGCCTCATGGAAACTGGTTGATGCCTCCACCTTCATCTCATTTTGATTATCCAGTTCACTCAACTGAACTGATGTCAAAACCTGTGTTATTTCAGAACCAAGATATTCTGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCATTAAAAATCCTGCTCTTCCAGACCCTACAGGATTGAATAGAAATATGATGAATGAGGCAGATGTTATGCATCCCAATATACATCAAATCCATTCGAACGAGTCTGACCTCAAGTCTGAACTATCTAGGGGTTCAAAGTTGGCTGATAAATCCCTTGCCATCAATGAGCCTGATAAGTCGCAGCAAACATGCACACAAAACTCGAAGGATCAGAGTAAATCACAGGGTGGTTCAACGAGGAGTTGTACAAAGGTTCACAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAAGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAATTTGGTGGCGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACTGATGATGAGGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCCAGGATCCCTAAATTTAAAAGGTGATGAGAATCCATCTGTTGAAGATGAAGAAGCAAAAGAGATTAAAAGTCAGGCAGTACCTTCAATGTCAGCACCCGAGAGTTTTTGGTGCGGTATGAAAGGAGTTGAGCAGAGTAAATGCAACGAGGCCGGAAGGTTGCGGCCTTATGTTATAGTTGAGTCGGTGGTGTGCATCAGCCGGAATCTGCAAGAAAACGTCGAGATGATCGATCTGCATTCAGAAATATTTGCTGCCTTTTATGCGAATGCCAAGGGCAAGGCAGAGAAGAAGAGAGAACATGCTCACACCAGTCGAAAATTGTCTAAAGAGGGCTGA | 2754 | 45.9 | MASSEVSIKPNSASTKDPSDPPNTLSARDADIALYTELWNACAGPLVSVPRENERVFYFPQGHIEQVEASTNQLADQQMPVYNLPSKILCRVINVHLKAEPDTDEVFAQITLLPEANQDEDAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPNRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRAKRPRSNMVPTSPDSSVLTREGSSRVTVDPSPASAFTRVLQGQEFSTLRGNFIDGNESDAAEKSVMWPPSLDDEKIDVVSTSKKHGADCWIPPGRSEPTYADLLSGFGTNIDSSRGVRTAMGDPAVVTANSIRKHAMDQDGKFNFLGGSPWSVLPSGLSLNLVDSSQKGHIQAGDLPYQVRGNATFNGFGDHSMVHCHRIEQPHGNWLMPPPSSHFDYPVHSTELMSKPVLFQNQDILKPKDGNCKLFGISLIKNPALPDPTGLNRNMMNEADVMHPNIHQIHSNESDLKSELSRGSKLADKSLAINEPDKSQQTCTQNSKDQSKSQGGSTRSCTKVHKQGIALGRSVDLSKFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNPGSLNLKGDENPSVEDEEAKEIKSQAVPSMSAPESFWCGMKGVEQSKCNEAGRLRPYVIVESVVCISRNLQENVEMIDLHSEIFAAFYANAKGKAEKKREHAHTSRKLSKEG | 917 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 133246 | 140968 | + | Maker00007474 | Lcy2g0013 | 624778 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0013 | 917 | CDD | B3_DNA | 138 | 240 | IPR003340 | GO:0003677(InterPro) | |
Lcy2g0013 | 917 | MobiDBLite | consensus disorder prediction | 691 | 717 | - | - | |
Lcy2g0013 | 917 | FunFam | Auxin response factor | 711 | 805 | - | - | |
Lcy2g0013 | 917 | ProSiteProfiles | PB1 domain profile. | 716 | 800 | IPR053793 | - | |
Lcy2g0013 | 917 | SMART | B3_2 | 140 | 242 | IPR003340 | GO:0003677(InterPro) | |
Lcy2g0013 | 917 | Pfam | AUX/IAA family | 700 | 804 | IPR033389 | - | |
Lcy2g0013 | 917 | Gene3D | - | 303 | 373 | - | - | |
Lcy2g0013 | 917 | Gene3D | - | 137 | 242 | IPR015300 | - | |
Lcy2g0013 | 917 | FunFam | Auxin response factor | 138 | 242 | - | - | |
Lcy2g0013 | 917 | Pfam | Auxin response factor | 266 | 348 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lcy2g0013 | 917 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Lcy2g0013 | 917 | MobiDBLite | consensus disorder prediction | 389 | 414 | - | - | |
Lcy2g0013 | 917 | SUPERFAMILY | DNA-binding pseudobarrel domain | 137 | 269 | IPR015300 | - | |
Lcy2g0013 | 917 | Gene3D | - | 712 | 805 | - | - | |
Lcy2g0013 | 917 | FunFam | Auxin response factor | 303 | 375 | - | - | |
Lcy2g0013 | 917 | Pfam | B3 DNA binding domain | 140 | 241 | IPR003340 | GO:0003677(InterPro) | |
Lcy2g0013 | 917 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Lcy2g0013 | 917 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 33 | 806 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lcy2g0013 | 917 | ProSiteProfiles | B3 DNA-binding domain profile. | 140 | 242 | IPR003340 | GO:0003677(InterPro) | |
Lcy2g0013 | 917 | MobiDBLite | consensus disorder prediction | 375 | 414 | - | - | |
Lcy2g0013 | 917 | SUPERFAMILY | CAD & PB1 domains | 709 | 793 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0013 | Lcy-Chr2:133246 | Lcy6g0783 | Lcy-Chr6:7804027 | 6.27E-188 | dispersed | |
Lcy2g0013 | Lcy-Chr2:133246 | Lcy4g0845 | Lcy-Chr4:11328680 | 5.24E-187 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19661 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0013 | K14486 | - | csv:101206845 | 1562.36 |