Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0016 ATGATTGCATCAGTTACAGAATGCAATAATGATTTGGTGAATATTACGGATCGGAATTTCCATATGGGAGAATCTTCTATTCAAATTCAGTCGATATCTATGGAATTTTCTCCTACAATATTAAATGCCAAAAATAAAGGAAAGTCAAAATCCCATATTTCGTCTCCACCAATGCGACTGCCACAAAATCCTAATTCAGAGCCTAAACAAATCCCGCAATCAAAAGGCCTCATTATTTTTAAACTGGGTATGAAAGAAACCACATGGTCCACATCCAATCAACCCATGGCTCGTGAAAATATAGATACTAATGATTTCATCTCAAGCCCAGAAGCCGAAGCTACGCTGTTAAGCCAAACAGTCGATAATAATAGACAGGTTCGAAAACTCATGGCTTCAACAACAATCCTTTTCACTGAGATACCATCATTGACACGTGTCCGACACCGACACGCCCCGACACGCCTTCGACACATGTCTGACACGCCACGTGGTCTTAATATAAACTACAACAAAAGTGAGCTTCTGGACATTCAAGTTTCACAAGAAGATATGAATGAGTTGGCTAGAAAATTTGGATGCAGAGTGGGTACATGGCTGTCAACTTATCTTGGACTTCCACTGGGAAGCCATCCAAAAAGTCCTCTGTTTTGGCAACCAATTTTGGAGAAGATTCATCATAAGCTTCATAATTGGCAATACTTCTTCCTCTCCAAAGGAGTAGACATACACTTATACAATCAACTCTCTCCAATATGCCTATATTTTCTATCATTATTTCGAATGCCAGCTCAAACTGTAAAGTCTTTTGAAAAAATCTTGAGGGATTTTCTATGGGAAGGTGCAAAAAGCAATGGTGGATTACTGAATCGAGTTAGGATACCTAACAATTACACAATCTCCATGGAGGAAGATCTCAAGGCTGAACAATCTGGTAAAACCACATGTGATAAGAACTGGAATAGAACCACGGTGTATTTTGATATAAAAGGACTACACGATAAGCCAAGTATTCGAGCTAATTGGCGCTCCAATAGCCAAGTGCGGCAACCGGCAGTGCGTAGAGATAGCGGAGATGGTCGGCAATGTACACGACGACAGCTAGGGTTTTTCTTCACACATTCTACTATAAGCGATAATGAAGACTCAAACATCAGCAGTATCTTTGAAGAAGCTTCTGATTTTATTGTTGACGTTGAAAGAAAGGGTGGAAAGGTCCTGGTTCATTGCTTTGAAGGGAAAAGCAGAAGTGCCACATTAGTTCTTGCTTACTTGATGCTTAGAAAGAAATACACATTGTTAAAGGCATGGAATGCTTTGAAACGAGTTCACCGTCGAGCTCAGCCTAATGATGGGTTTGCAAAAACATTATTAGAATTAGATCGAAGAATACATGGAAAAGTTTCCATGGAGTGGCAATCACGAAAACCAACTATGAAAGTTTGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAGCTTCATCTGCAAAAATCACACAAGAAGCTATCATCTGGGAGCGTGGACAGTGCAATGACCATGGAAATACAGAAAGCATTAACAGCTCTAAAAATCAGTCGTGGCGGAAGCGTGAGCCCCACCCAGAGGCAGTCTCTTCTGATCCTGGATGAATAG 1647 40.68 MIASVTECNNDLVNITDRNFHMGESSIQIQSISMEFSPTILNAKNKGKSKSHISSPPMRLPQNPNSEPKQIPQSKGLIIFKLGMKETTWSTSNQPMARENIDTNDFISSPEAEATLLSQTVDNNRQVRKLMASTTILFTEIPSLTRVRHRHAPTRLRHMSDTPRGLNINYNKSELLDIQVSQEDMNELARKFGCRVGTWLSTYLGLPLGSHPKSPLFWQPILEKIHHKLHNWQYFFLSKGVDIHLYNQLSPICLYFLSLFRMPAQTVKSFEKILRDFLWEGAKSNGGLLNRVRIPNNYTISMEEDLKAEQSGKTTCDKNWNRTTVYFDIKGLHDKPSIRANWRSNSQVRQPAVRRDSGDGRQCTRRQLGFFFTHSTISDNEDSNISSIFEEASDFIVDVERKGGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRQSLLILDE 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 149834 159598 - Maker00007694 Lcy2g0016 624781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0016 548 Pfam Dual specificity phosphatase, catalytic domain 373 462 IPR000340 GO:0016311(InterPro)
Lcy2g0016 548 CDD DSP 377 459 - -
Lcy2g0016 548 ProSitePatterns Tyrosine specific protein phosphatases active site. 408 418 IPR016130 GO:0016311(InterPro)
Lcy2g0016 548 MobiDBLite consensus disorder prediction 44 71 - -
Lcy2g0016 548 ProSiteProfiles Dual specificity protein phosphatase domain profile. 319 466 IPR020422 GO:0006470(InterPro)
Lcy2g0016 548 Gene3D Protein tyrosine phosphatase superfamily 338 486 IPR029021 -
Lcy2g0016 548 SMART dsp_5 269 463 IPR020422 GO:0006470(InterPro)
Lcy2g0016 548 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 386 442 IPR000387 GO:0016311(InterPro)
Lcy2g0016 548 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 366 465 IPR029021 -
Lcy2g0016 548 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 369 547 IPR035010 GO:0004721(InterPro)|GO:0009737(InterPro)|GO:0043622(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0016 Lcy-Chr2:149834 Lcy1g2150 Lcy-Chr1:30518643 4.72E-34 dispersed
Lcy2g0016 Lcy-Chr2:149834 Lcy6g1956 Lcy-Chr6:41462658 6.99E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0016 K14165 - csv:101220184 304.293