Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0055 ATGGAGAGCAACAATCAAGCCCAATCCTCCCCCTACCCTCCTCCTCAGGCCCCCGTCCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCTGACGAGGACGTGCGTATGATCTCCGCCGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCCGAAGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCAGCGGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGACGAGATCAAGGACGAGGCTGGCTTGGGAGGCATGGTCGGAGCAACTGCTAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCCGCGGGGGCTCCGGGAGGGATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTACGCCCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGACCGCGGCGGAGGACGGCTCTTACGCCAGTGGGGGCAGCAGCGGGCAGGGAAATCTTGATGGTCAGAGGCTGAATTTAGTTCTTGCTTTTTCGTGTTTTATATTTACTTCTTCCTTTATCGGGAGATTGCATGTTGTTGTAGTTGGTGAGATTTCAGTTTCAAACCCAATGAAACTTAGAGGGGAGGAGCTAGTTGGTTGGAAGTCATTCATTGACCTTGTGTGGGAGTTCCTAAATGGGGGGATCTCAAGGAAAGCTGGAAGTCGAGATAGAGCCAAAAGATTAAGACCGTTTGTGGAGGTGTTGAAACTTGATTGCTTAATGCACGAGGCTGGTGCAGAGAAGTTGAATAGGGAGAAGTTTCCTGAAACTTTTCTTGTGAACATGAAAGAGCACATAACGGGTCATTTCTTAGGGACTTTGGTGACCTCAAATACTAAAGCAATTCTTGTGTATCGATCTGCTGGCTATGATGCGTTTTGCTGA 1077 50.88 MESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQRLNLVLAFSCFIFTSSFIGRLHVVVVGEISVSNPMKLRGEELVGWKSFIDLVWEFLNGGISRKAGSRDRAKRLRPFVEVLKLDCLMHEAGAEKLNREKFPETFLVNMKEHITGHFLGTLVTSNTKAILVYRSAGYDAFC 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 391340 396411 + Maker00007455 Lcy2g0055 624820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0055 358 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 32 140 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lcy2g0055 358 MobiDBLite consensus disorder prediction 1 23 - -
Lcy2g0055 358 SUPERFAMILY Histone-fold 31 128 IPR009072 GO:0046982(InterPro)
Lcy2g0055 358 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677(InterPro)
Lcy2g0055 358 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
Lcy2g0055 358 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0055 Lcy-Chr2:391340 Lcy2g2047 Lcy-Chr2:39267745 1.25E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19665 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0055 - - - 0.0