Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0055 ATGGAGAGCAACAATCAAGCCCAATCCTCCCCCTACCCTCCTCCTCAGGCCCCCGTCCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCTGACGAGGACGTGCGTATGATCTCCGCCGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCCGAAGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCAGCGGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGACGAGATCAAGGACGAGGCTGGCTTGGGAGGCATGGTCGGAGCAACTGCTAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCCGCGGGGGCTCCGGGAGGGATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTTTACGCCCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGACCGCGGCGGAGGACGGCTCTTACGCCAGTGGGGGCAGCAGCGGGCAGGGAAATCTTGATGGTCAGAGGCTGAATTTAGTTCTTGCTTTTTCGTGTTTTATATTTACTTCTTCCTTTATCGGGAGATTGCATGTTGTTGTAGTTGGTGAGATTTCAGTTTCAAACCCAATGAAACTTAGAGGGGAGGAGCTAGTTGGTTGGAAGTCATTCATTGACCTTGTGTGGGAGTTCCTAAATGGGGGGATCTCAAGGAAAGCTGGAAGTCGAGATAGAGCCAAAAGATTAAGACCGTTTGTGGAGGTGTTGAAACTTGATTGCTTAATGCACGAGGCTGGTGCAGAGAAGTTGAATAGGGAGAAGTTTCCTGAAACTTTTCTTGTGAACATGAAAGAGCACATAACGGGTCATTTCTTAGGGACTTTGGTGACCTCAAATACTAAAGCAATTCTTGTGTATCGATCTGCTGGCTATGATGCGTTTTGCTGA 1077 50.88 MESNNQAQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQRLNLVLAFSCFIFTSSFIGRLHVVVVGEISVSNPMKLRGEELVGWKSFIDLVWEFLNGGISRKAGSRDRAKRLRPFVEVLKLDCLMHEAGAEKLNREKFPETFLVNMKEHITGHFLGTLVTSNTKAILVYRSAGYDAFC 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 391340 396411 + Maker00007455 Lcy2g0055 624820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0055 358 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 32 140 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Lcy2g0055 358 MobiDBLite consensus disorder prediction 1 23 - -
Lcy2g0055 358 SUPERFAMILY Histone-fold 31 128 IPR009072 GO:0046982(InterPro)
Lcy2g0055 358 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677(InterPro)
Lcy2g0055 358 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
Lcy2g0055 358 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0055 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0055 Lcy-Chr2:391340 Lcy2g2047 Lcy-Chr2:39267745 1.25E-63 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g0055 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.2e-88 323.6
Lcy2g2047 . 201 369 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.1e-52 204.1
Lcy4g0296 . 79 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.4e-52 203.8
Lcy2g2047 . 120 379 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.2 2.0e-54 209.9
Lcy4g0296 . 19 177 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 7.2e-49 191.4
Lcy2g0055 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.0e-42 171.0
Lcy2g2047 . 120 369 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.6 5.9e-61 231.5
Lcy4g0296 . 25 221 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.9e-52 202.6
Lcy2g0055 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Lcy2g0055 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.0e-38 155.2
Lcy2g0055 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.0e-80 297.4
Lcy2g2047 . 201 369 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.6e-49 193.7
Lcy4g0296 . 79 230 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.7e-49 193.0
Lcy4g0296 . 43 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 1.8e-64 243.0
Lcy2g2047 . 173 337 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 6.6e-51 198.0
Lcy2g0055 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Lcy7g0738 . 65 344 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.5 8.8e-60 228.0
Lcy13g1687 . 58 190 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.8 1.2e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19665 None None None None Lcy TF