Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g0066 | ATGCAACTCAACTTCCCCATCTCCTTCTTCTTCTTCCTTCTCTCTCTCTCTCTATGGGCTTTCTTTTTCCTCTATCTCTGTATCTTTAAATTCTACTGCTTTTCTGCGAAGCGCTTTTCCCCTCCTTCCTACCCTCTCATCGGCTGCCTCTTTTCTTTCTACAAAAACCGCCGCCGCCTTCTCACCTGGTACACCGACCTGCTTTCCGACTCCCCGACGCGGACCATCGTCGTGCACCGGCTCGGTTCGAGGCGGACCGTCGTCACGGCCAACCCGGCCAATGTCGAGTACATGCTCAAGACTAATTTTGTGAATTACCCTAAGGGGAAGCCGTTCACTGATATACTCGGCGATCTCCTCGGCTGTGGCATTTTCAACGTCGACGGCGAGTTGTGGTCCACGCAACGCAAGCTGGCGAGTCACGAATTTTCTGCCAAGTCTTTGAGGGAATTCGTCGTCAAGACGCTTGAAGATGAAGTCCATCTCCGTTTGCTTCCCTTGCTTCACAACGCCGTCCGGACTAACGCCGTCTTGGATTTGCAAGACGTTTTGGGAAGGCTCGCTTTTGACACCGTCTGTAAGGTGACGCTGGGAACGGACGAGCAATGTTTGGACATGTCGCGGCCAGTTCCAGCAATAGTAAATGCATTCGACAGGGCCACAGGGATCAGCGCCAAGCGGGCAATAGCGCCGCTGTTTCTCGCGTGGAAAGCCAAGCGCCTGTTCAACGTCGGCTCCGAAAAGCAGCTCAAAGAAGCAGTGGAAATGGTCCACGCATGGGTCTCCAACATCATTCGCAACAAAAACCTTGATAACAGCGATATTGATTTGTTGTCTCGCCTCTTGTTGGCCGGCCACGGCGAAGAGGTCGTCCGAGACATGGTTGTCAGCTTCATAATGGCTGGCCGCGACACCACCTCCGCCGCCATGACGTGGCTCTTCTGGTTGCTCACGAAACACCCCAAGGCCGAAGAGGCCCTGATCAACGAAGTCACTTCCTTGTCCGAAACGGCGTCGTCGGGCTACGCCTACGATGACTTGAAGGACATGAAGTATTTGAAGGCGTGTTTGTGCGAGTCCATGCGGCTTTACCCGCCGGTGGCTTGGGATTCGAAGCACGCGGCGGCGCCGGACGTTCTTCCGGACGGAACTCCGGTGAGGAAAGGCGACAGAGTCACGTATTTCCCGTACGGAATGGGCCGGATGGAGGAGCTATGGGGGAAGGACCGGCTCGAGTTCAAACCGGACCGGTGGCTCCAGAACGGGGAGTTGAAACCGGTCAGCCCGTTCAAGTTCCCGGTGTTTCAAGCCGGTCCGAGGATGTGCTTGGGAAAGGAAATGGCGTTCATTCAGATGAAATACGTGGTGGCCACGGTTTTGAAGCGGTTTGAATTTAGACCGGCGAGTGAAAATCAGCCGGTTTTTGTCCCGTTGTTGACAGCTCATATGGCTGGTGGATTACAGGTTTATGTTAGAGAAAGGACAGGACAAAAGTCAACCATTTGGTGA | 1509 | 54.14 | MQLNFPISFFFFLLSLSLWAFFFLYLCIFKFYCFSAKRFSPPSYPLIGCLFSFYKNRRRLLTWYTDLLSDSPTRTIVVHRLGSRRTVVTANPANVEYMLKTNFVNYPKGKPFTDILGDLLGCGIFNVDGELWSTQRKLASHEFSAKSLREFVVKTLEDEVHLRLLPLLHNAVRTNAVLDLQDVLGRLAFDTVCKVTLGTDEQCLDMSRPVPAIVNAFDRATGISAKRAIAPLFLAWKAKRLFNVGSEKQLKEAVEMVHAWVSNIIRNKNLDNSDIDLLSRLLLAGHGEEVVRDMVVSFIMAGRDTTSAAMTWLFWLLTKHPKAEEALINEVTSLSETASSGYAYDDLKDMKYLKACLCESMRLYPPVAWDSKHAAAPDVLPDGTPVRKGDRVTYFPYGMGRMEELWGKDRLEFKPDRWLQNGELKPVSPFKFPVFQAGPRMCLGKEMAFIQMKYVVATVLKRFEFRPASENQPVFVPLLTAHMAGGLQVYVRERTGQKSTIW | 502 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 478628 | 480370 | + | Maker00007530 | Lcy2g0066 | 624831 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g0066 | 502 | CDD | CYP86A | 74 | 487 | - | - | |
| Lcy2g0066 | 502 | SUPERFAMILY | Cytochrome P450 | 41 | 494 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | Gene3D | Cytochrome P450 | 39 | 501 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | Pfam | Cytochrome P450 | 41 | 473 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | PANTHER | CYTOCHROME P450 | 25 | 487 | - | - | |
| Lcy2g0066 | 502 | PRINTS | E-class P450 group IV signature | 292 | 318 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | PRINTS | E-class P450 group IV signature | 350 | 366 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | PRINTS | E-class P450 group IV signature | 384 | 398 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | PRINTS | E-class P450 group IV signature | 401 | 419 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | PRINTS | E-class P450 group IV signature | 442 | 460 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | PRINTS | P450 superfamily signature | 355 | 366 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | PRINTS | P450 superfamily signature | 442 | 453 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | PRINTS | P450 superfamily signature | 433 | 442 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | PRINTS | P450 superfamily signature | 301 | 318 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy2g0066 | 502 | FunFam | Cytochrome P450 | 33 | 497 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0066 | Lcy-Chr2:478628 | Lcy5g0812 | Lcy-Chr5:12554633 | 6.08E-139 | dispersed | |
| Lcy12g2143 | Lcy-Chr12:42723585 | Lcy2g0066 | Lcy-Chr2:478628 | 4.68E-88 | transposed | |
| Lcy10g0101 | Lcy-Chr10:1316657 | Lcy2g0066 | Lcy-Chr2:478628 | 9.66E-207 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy2g0066 | K20665 | - | csv:101202989 | 823.157 |