Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0085 ATGCAGACTGGCAAGACTTCTTTTGTTGAGCATCGCACATTTCTTCATCTATACCGCAGTTTCCACCGTCTCTGGATGTTTTTGGCAATTATATTCCAGGCTCTGACAATTTTTGCCTTCCATAAAGAGCGTATGGATTTGGACACTTTCAAAGCTATTCTTAGCATTGGGCCAACATTTGCAATCATGAACTTCATTGAAAGTTGCTTAGATGTGTTACTTACTTTTGGGGCATACACCACTGCAAGAGGAATGGCTATATCAAGGATTGTTATTAGGTTCTTCTGGTGGGGATTGAGTTCTGTTTTTGTGACTTATGTTTACGTGAAGGTTCTTGAAGAAAGAAATATGCGAAGCTCAGATAATTCATTCTATTTTCGAATATATATTATAGTGTTGGGAGTTTATGCTTCTTTACGCCTTGTGGTTGCAATGTTGCTAAAGTTACCTGCATGCCATACTCTTTCTGAGATGTCAGATCAGTCTTTTTTTCAATTTTTCAAATGGATCTATCAGGAACGTTATTATGTTGGTCGTGGTCTATATGAAAAACCGAGTGATTATTGCAGATATGTAGCCTATTGGTTGGTGCTCTTGATTTGTAAATTCATTTTTGCTTACTTTCTCCAGATTAAACCACTTGTCCAACCAACCACTATTATTGTCGACCTTCCATCTCTTGAGTATTCATGGCATTCTTTCATTTCGAAGAACAATAATAATGTATCGACTATAGTTAGCTTATGGGCTCCTGTTGTGGCTCTCTATCTCTTGGACATTTACATATGGTACACACTCTTGTCAGCCATCATTGGTGGTGTAAAGGGTGCTCGGGCTCGTTTGGGTGAGATACGATCACTTGAAATGATGCATAAGCGTTTTGAGAGCTTTCCGAAAGCATTTGTAAATAACCTTGTCTCTACAAAGACAAAAAGTTTGCCACCCAACGGACAAGAACCTCAGGACTCTCCGGATATGAACAAGACATATGCGGCAATCTTTTCTCCATTTTGGAATGAGATCATTAAAAGCTTACGTGAGGAAGACTATATTAGCAATAGGGAGATGGACTTGCTCTCTATTCCTAGCAACACAGGAAGTCTCAGATTGGTCCAATGGCCTTTATTTCTTTTAAGTAGTAAGATATTCTTGGCTGTTGATTTGGCTTTGGATTGCAAAGATACGCAGACAGATCTGTGGAACAGAATATGTCGGGATGAGTATATGGCCTATGCAGTTCGAGAATGCTACTACAGTGTTGAAAAAATTTTATATGCCCTTGTCGATGGTGAAGGGAGACTTTGGGTTGAAAGGATTTTTCGGGAGATCACCAACAGTATCTCAGAGGATTCCCTGGTTATAACCTTGAACCTTAAGAAGATTCCAATTGTGTTACAAAAGTTTACTGCGCTTACAGGGCTTTTGACTCGAAAAGAAACTCCTGAACTTGCTAAAGGTGCTGCAAAAGCTGTATTTGAGCTTTATGAGGTTGTTACGCATGAGCTGCTTTCATCAGATTTGAGGGAGCAGCTTGACACATGGAATATCTTGTTGAGGGCAAGAAATGAAGGTCGCCTTTTTTCTCGGATAGAATGGCCGAAGGATCTTGAAATTAAAGAGCTCGTGAAGCGTCTGCATTTACTTCTTACAGTGAAGGATTCTGCAGCTAACATTCCAAAAAATCTTGAAGCAAGAAGAAGACTACAATTTTTTACAAATTCATTATTTATGGACATGCCTTCAGCAAAACCTGTCAGTGAAATGGTGCCATTCAGTGTCTTTACTCCATATTACAGTGAAACTGTGCTTTATAGTTCCTCTGAAATACGGATGGAAAATGAGGATGGCATATCCATTCTTTTCTATCTTCAGAAGATTTTTCCAGAGGTCACCTTTAGATCGGATAGGAGGGATACTCGTTTGTGGAACCCTAACCCTTCTAAGGGTTTCTCTTGCCGCTCGTTCTTTCATTGTCTTCTAGACCCTTTTCCTCTTGAGAAATCAGTTTATTCTTTGGTTTGGAAAGTGAACATCCCAAAGAAGGTGCAGTTTTTTACTTGGCAGGTTCTCCATGGAAGAGCCAACACCCTTGATCGGCTTGCGAGAAAGATGCCTAATTTGATAGGCCCGTTCTGTTGTATTCTCTGTAGGATGGCGGAGGAAAACCTCGATCATATTTTGTGGCATTGTGACTTTTCGTGCTCGGTGTGGAACACTTTCTTTGAGATTTTTGGGCTTCAGTTTGCTAGACATAGGGATTTCAGGGAGATGATCGATGAGTTCCTTCCCCATCCTCCTTTTCGAGACCAGGGAAACTTCTTATGGCAAGCTGGGATTTGTGCTATTATTTGGGGGTTGTGGGGGGAGAGAAATAACAAAATTTTTAGAGGGAAGGAGAGGAATGCGGAGGATGTTTGGGACCTTATTAAATATTCTGTTTCGTTGTGGGCGTCGGTGACGCGTTTATTTAGAAAAAGTAGATCCATTAGTCTCACCCAAATCCGTATGGACCTCAAAGGTTTTGGCCTTGGGGATTATAGAGATTATAAGTTCCATTGTTCATAA 2565 40.35 MQTGKTSFVEHRTFLHLYRSFHRLWMFLAIIFQALTIFAFHKERMDLDTFKAILSIGPTFAIMNFIESCLDVLLTFGAYTTARGMAISRIVIRFFWWGLSSVFVTYVYVKVLEERNMRSSDNSFYFRIYIIVLGVYASLRLVVAMLLKLPACHTLSEMSDQSFFQFFKWIYQERYYVGRGLYEKPSDYCRYVAYWLVLLICKFIFAYFLQIKPLVQPTTIIVDLPSLEYSWHSFISKNNNNVSTIVSLWAPVVALYLLDIYIWYTLLSAIIGGVKGARARLGEIRSLEMMHKRFESFPKAFVNNLVSTKTKSLPPNGQEPQDSPDMNKTYAAIFSPFWNEIIKSLREEDYISNREMDLLSIPSNTGSLRLVQWPLFLLSSKIFLAVDLALDCKDTQTDLWNRICRDEYMAYAVRECYYSVEKILYALVDGEGRLWVERIFREITNSISEDSLVITLNLKKIPIVLQKFTALTGLLTRKETPELAKGAAKAVFELYEVVTHELLSSDLREQLDTWNILLRARNEGRLFSRIEWPKDLEIKELVKRLHLLLTVKDSAANIPKNLEARRRLQFFTNSLFMDMPSAKPVSEMVPFSVFTPYYSETVLYSSSEIRMENEDGISILFYLQKIFPEVTFRSDRRDTRLWNPNPSKGFSCRSFFHCLLDPFPLEKSVYSLVWKVNIPKKVQFFTWQVLHGRANTLDRLARKMPNLIGPFCCILCRMAEENLDHILWHCDFSCSVWNTFFEIFGLQFARHRDFREMIDEFLPHPPFRDQGNFLWQAGICAIIWGLWGERNNKIFRGKERNAEDVWDLIKYSVSLWASVTRLFRKSRSISLTQIRMDLKGFGLGDYRDYKFHCS 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 663087 681816 - Maker00007459 Lcy2g0085 624850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0085 854 PANTHER LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 3 629 - GO:0005886(PANTHER)|GO:0046527(PANTHER)
Lcy2g0085 854 Pfam zinc-binding in reverse transcriptase 650 737 IPR026960 -
Lcy2g0085 854 Pfam 1,3-beta-glucan synthase component 558 629 IPR003440 GO:0000148(InterPro)|GO:0003843(InterPro)|GO:0006075(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2103 Lcy-Chr10:45078501 Lcy2g0085 Lcy-Chr2:663087 7.38E-20 dispersed
Lcy13g1435 Lcy-Chr13:32842324 Lcy2g0085 Lcy-Chr2:663087 5.51E-71 dispersed
Lcy1g1758 Lcy-Chr1:18679468 Lcy2g0085 Lcy-Chr2:663087 4.10E-06 dispersed
Lcy2g0085 Lcy-Chr2:663087 Lcy5g1097 Lcy-Chr5:22536248 1.75E-114 dispersed
Lcy2g1136 Lcy-Chr2:11349846 Lcy2g0085 Lcy-Chr2:663087 1.86E-25 dispersed
Lcy2g1137 Lcy-Chr2:11357776 Lcy2g0085 Lcy-Chr2:663087 4.93E-44 dispersed
Lcy2g0085 Lcy-Chr2:663087 Lcy7g1244 Lcy-Chr7:15569192 2.48E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0085 K11000 - csv:101217890 1191.79