Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0117 ATGGAAGCTGGGAGTAGATTCTACTCTGCTACGGATGAGTTCAGATTGGAAACGAAATGGCTGATTGATCCAAAACATCTCTTTGTTGGACCTAGAATTGGAGAGGGAGCTCATGCCAAAGTTTACGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACGGCTGATGAGGTTGCAAAGAAAGAGGCCCGGTTTGCTCGAGAGGTTGCAATGTTGTCTAAAGTACAACATAAAAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACTGAGCTATTATTAGGAGGGACCTTACGAAAGTACCTGCTCAATATGCGCCCACGGTGCTTGGACACACGTGTGGCAGTTGGTTTTGCGCTCGATATTGCTCGTGCTATGGAATGCCTGCACTCTCATGGCATCATACACCGTGATCTGAAACCTGAGAACCTACTGTTGACTGCAGATCACAAAACAGTCAAATTAGCCGATTTTGGTTTGGCAAGAGAAGAGTCATTGACGGAGATGATGACTGCGGAGACGGGGACCTACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTGAGGCAGGGCGAGAAGAAACATTATAACCATAAAGTGGATGCCTATAGCTTTGCAATTGTGTTATGGGAACTGCTACATAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAGGCAGCATATGCAGCTGCTTTTAAGAATGTAAGGCCTAGCGCAGAGAATCTTCCAGAGGAACTGGCTGTTGTTCTAACATCGTGCTGGCAAGAGGATGCAAATGCTCGTCCAAACTTCACCCAAATTATCCAAATGCTTCTCAATTACCTTTATACCATTGCACCGCCCGAGCCAATGATTCCTTCCCGAGTTTTCACTTCTGAGAACACGGTGTTTCCTCCTGAGTCTCCCGGAACAAGCTCACTGATGGCAGTCCTTGACGATTCAGGGGACACTCCAAAAGCTAAAATGGAAAATAAGCCCAGAGGTTGTTTCTTCTGCTCCAATGACTGTTACTAA 1062 45.48 MEAGSRFYSATDEFRLETKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETADEVAKKEARFAREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEELAVVLTSCWQEDANARPNFTQIIQMLLNYLYTIAPPEPMIPSRVFTSENTVFPPESPGTSSLMAVLDDSGDTPKAKMENKPRGCFFCSNDCY 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 885342 888982 - Maker00007479 Lcy2g0117 624882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0117 353 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
Lcy2g0117 353 FunFam Kinase suppressor of Ras 1 16 106 - -
Lcy2g0117 353 SMART serkin_6 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0117 353 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0117 353 Pfam Protein tyrosine and serine/threonine kinase 32 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0117 353 Gene3D Transferase(Phosphotransferase) domain 1 108 296 - -
Lcy2g0117 353 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524(InterPro)
Lcy2g0117 353 SUPERFAMILY Protein kinase-like (PK-like) 18 316 IPR011009 -
Lcy2g0117 353 CDD STKc_MAP3K-like 33 287 - -
Lcy2g0117 353 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0117 353 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0117 353 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0117 353 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0117 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0117 353 PANTHER SERINE-THREONINE PROTEIN KINASE 21 288 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy2g0117 353 FunFam serine/threonine-protein kinase HT1 108 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1896 Lcy-Chr10:43096822 Lcy2g0117 Lcy-Chr2:885342 3.48E-133 dispersed
Lcy1g0730 Lcy-Chr1:6240136 Lcy2g0117 Lcy-Chr2:885342 5.43E-99 dispersed
Lcy2g0117 Lcy-Chr2:885342 Lcy5g1875 Lcy-Chr5:41596723 1.57E-67 dispersed
Lcy5g0042 Lcy-Chr5:567813 Lcy2g0117 Lcy-Chr2:885342 7.01E-144 transposed
Lcy10g0161 Lcy-Chr10:2211542 Lcy2g0117 Lcy-Chr2:885342 4.76E-204 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65699 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0117 - - - 0.0