Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0127 ATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCAAGCAATGTGACAAAGCTGCTGAATGAGCTTTTGCCTCACCAAAGAGAGGATGCAGTCAACTCTCTAGCCTACGAGGCCGAGGCCCGAGTCCGAGACCCGGTCTACGGTTGCGTCGGAGCCATCTCGTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTCGATGCTGCGAATGCCGACCTTATTCGGTATGCATGCAACGAGATCCCTAACGCCGGGGTAAGTCAAGTGGTTCAGCCAATAACCAGCCTTCGCCCGAGGGCTTTGGATCAGTATAATACAAGAGTTCTTGGCAATGAAGGTTCATCAAGTGGATATTTTAACCAACACCTTCCTGCCTTCCCCATGGCTTATCCACTCCCTTGGAATGAACACTCTTCTGGAAATAACATCAATGAAGGAGGAGGGGATGCCAATATTTGA 570 48.95 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSQVVQPITSLRPRALDQYNTRVLGNEGSSSGYFNQHLPAFPMAYPLPWNEHSSGNNINEGGGDANI 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 981291 981860 + Maker00007682 Lcy2g0127 624892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0127 189 Coils Coil 89 116 - -
Lcy2g0127 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 121 - -
Lcy2g0127 189 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Lcy2g0127 189 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1903 Lcy-Chr10:43176159 Lcy2g0127 Lcy-Chr2:981291 3.57E-67 dispersed
Lcy2g0127 Lcy-Chr2:981291 Lcy4g1549 Lcy-Chr4:39163632 3.45E-57 dispersed
Lcy10g0181 Lcy-Chr10:2497599 Lcy2g0127 Lcy-Chr2:981291 3.05E-72 wgd
Lcy2g0127 Lcy-Chr2:981291 Lcy5g2196 Lcy-Chr5:45039484 1.29E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19673 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0127 - - - 0.0