Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0155 TTGTATTTGTCAGCAATGGGTGACATCTCATTAGAAGATGTCAAGAACGAGAACGTTGATCTTGAACGAATTCCTGTAGAGGAAGTTTTTGAGCAACTAAAATGTACAAAAGAAGGATTGAGTACAGCAGAAGGAGAAAAAAGGCTCCAAATTTTTGGCCCTAACAAGCTTGAAGAGAAAAAAGAGAGCAAACTTCTGAAGTTTTTGGGATTTATGTGGAACCCTCTCTCATGGGTCATGGAATCTGCGGCAATCATGGCCATTGTCTTGGCCAATGGAGGGGGGAAACCACCGGATTGGCAAGATTTTGTCGGTATCACGGTCTTGTTGATCATCAACTCTACCATCAGTTTCATTGAAGAGAACAATGCTGGAAATGCAGCTGCTGCTCTGATGGCTGGTCTTGCCCCCAAAACCAAGGTATTTGCATTGATTTTGAATTTGTTGCAGCTCATCTTGTGGAAAGCACCAACCAAGTTGATAATTGACCTTTGTGATCTTAAAGGAGATGTAAGACAGAAAGCTCATGCCATTATTGATAACTATGCCAATCGTGGTCTACGTTCCTTGGCAGTTGGTCGACAGACTGTTAAGGATAAGGACAAAGAGAGTGCTGGAGAACCATGGGAATTTATTGGTCTCTTGCCCCTATTTGATCCTCCAAGACATGATAGTGCAGAAACCATCCGCCGAGCTCTCGAACTTGGTGTTAATGTTAAGATGATCACTGGTGACCAACTTGCAATTGGAAAAGAAACCGGTCGAAGGCTCGGCATGGGCACCAACATGTATCCATCGTCGTCTTTGCTTGGCCAATGCAAGGATGAGTCGATCGCTTCCATTCCTATTGATGAACTCATCGAGAAGGCTGATGGGTTTGCCGGTGTCTTCCCTGAACACAAGTATGAGATTGTTAAGAAACTTCAGGAGAGGAACCATATTTGTGGCATGACAGGAGATGGTGTCAATGATGCTCCAGCTCTCAAGAGAGCTGACATCGGTATTGCCGTGGCTGATGCAACTGATGCGGCAAGAAGTGCATCAGACATTGTCTTGACAGAGCCAGGTCTAAGTGTGATTGTGAGTGCTGTGTTAACCAGCAGGGCCATCTTTCAGAGAATGAAGAACTACACCATCTATGCAGTTTCCATCACAATCCGTATTGTGTTGGGATTCATGCTTGTTGCTCTCATTTGGAAGTTCGATTTCTCGCCTTTCATGGTCCTGATCATTGCCATCCTAAACGATGGAACCATCATGACCATTTCAAAGGACAGGGTCAAGCCATCACCTGTGCCAGACTCATGGAAACTCAAAGAAATCTTTGCTACTGGTGTTGTCCTTGGAACATACATGGCCCTCATGACCGTGCTTTTCTTCTGGCTCGCCAACAGAACCGACTTCTTCCCGAACAAATTTGGGGTAAAGCCACTCAAAGATCTTGCTGAGATGAACTCTGCTCTCTATCTTCAAGTGAGTATCATCAGCCAAGCTCTCATCTTTGTGACAAGGTCAAGAAGCTGGTCCTTTGTCGAATGCCCCGGTTTCTTGCTAGTTATTGCCTTCATTGCCGCACAGATGGTTGCCACTTTAATTGCTGTCTATGCCGAATGGGACTTTGCAAGGATTAAAGGCATTGGCTGGGGATGGGCAGGAGCCATCTGGATATTCAGCATTGTCACTTACTTCCCACTCGACATTCTCAAATTCGCAATCCGTTACGCCCTCAGTGGCAAGGCCTGGGACAACATGCTCGACAATAAGACGGCGTTCACGACGAAGAAGGATTATGGAATAGGCGAAAGAGAGGCACAATGGGCAACAGCCCAACGCACAATGCACGGCCTGCAGCCACCAGAAACCATATTCCATGAGACGAACAGCCACGAGGAGCATTCAGAGATTGCAGAGCAAGCCAAGAAAAGAGCTGAAGTTGCAAGGCTCAGGGAACTTCACACTCTAAAGGGGCATGTGGAGTCAGTGGTGAAGTTGAAAGGGCTGGACATTGAGACTATCCAACAACACTACACTGTTTAA 2037 46.05 LYLSAMGDISLEDVKNENVDLERIPVEEVFEQLKCTKEGLSTAEGEKRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFVGITVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVFALILNLLQLILWKAPTKLIIDLCDLKGDVRQKAHAIIDNYANRGLRSLAVGRQTVKDKDKESAGEPWEFIGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQCKDESIASIPIDELIEKADGFAGVFPEHKYEIVKKLQERNHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLKEIFATGVVLGTYMALMTVLFFWLANRTDFFPNKFGVKPLKDLAEMNSALYLQVSIISQALIFVTRSRSWSFVECPGFLLVIAFIAAQMVATLIAVYAEWDFARIKGIGWGWAGAIWIFSIVTYFPLDILKFAIRYALSGKAWDNMLDNKTAFTTKKDYGIGEREAQWATAQRTMHGLQPPETIFHETNSHEEHSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1218747 1223201 - Maker00007575 Lcy2g0155 624920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0155 678 FunFam Plasma membrane ATPase 211 366 - -
Lcy2g0155 678 SUPERFAMILY HAD-like 210 364 IPR036412 -
Lcy2g0155 678 Gene3D - 356 544 - -
Lcy2g0155 678 PANTHER CALCIUM-TRANSPORTING ATPASE 155 603 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lcy2g0155 678 NCBIfam HAD-IC family P-type ATPase 293 405 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0155 678 Gene3D - 627 678 - -
Lcy2g0155 678 Gene3D - 219 355 IPR023214 -
Lcy2g0155 678 FunFam ATPase 4 plasma membrane-type 304 544 - -
Lcy2g0155 678 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Lcy2g0155 678 PRINTS P-type cation-transporting ATPase superfamily signature 318 337 - -
Lcy2g0155 678 PRINTS P-type cation-transporting ATPase superfamily signature 235 245 - -
Lcy2g0155 678 PRINTS P-type cation-transporting ATPase superfamily signature 213 224 - -
Lcy2g0155 678 PRINTS P-type cation-transporting ATPase superfamily signature 341 353 - -
Lcy2g0155 678 Gene3D - 38 141 - -
Lcy2g0155 678 SUPERFAMILY Calcium ATPase, transmembrane domain M 19 576 IPR023298 -
Lcy2g0155 678 Gene3D - 156 218 IPR023299 GO:0000166(InterPro)
Lcy2g0155 678 Pfam haloacid dehalogenase-like hydrolase 188 332 - -
Lcy2g0155 678 PRINTS H+-transporting ATPase (proton pump) signature 175 193 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0155 678 PRINTS H+-transporting ATPase (proton pump) signature 489 510 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0155 678 PRINTS H+-transporting ATPase (proton pump) signature 318 334 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0155 678 PRINTS H+-transporting ATPase (proton pump) signature 290 306 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0155 678 PRINTS H+-transporting ATPase (proton pump) signature 349 374 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0155 678 Gene3D - 70 124 - -
Lcy2g0155 678 Pfam Cation transporter/ATPase, N-terminus 23 86 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0539 Lcy-Chr12:6595148 Lcy2g0155 Lcy-Chr2:1218747 0 dispersed
Lcy2g0155 Lcy-Chr2:1218747 Lcy9g0731 Lcy-Chr9:24866584 0 dispersed
Lcy2g0155 Lcy-Chr2:1218747 Lcy2g0298 Lcy-Chr2:2384611 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0155 K01535 - csv:101214655 949.503