Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0162 | ATGACCGTGGAGGGTCATTCCGTTGCTTCTGTCGGCGATGATGGCGCCACTGATCGTTTTCCTGTTGGGATGCGGGTTCTTGCTGTCGACGACGACCCTATTTGTCTTAAAATACTCGAGAATCTCCTCCGTAGATGCCAGTACCATGTTACGACGACGAAGCAGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGCGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCGGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTACGCACGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAAGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTCGAACCTACGGCAAAAAACAAGTTCCCTTGTCAAGATAAGGCTCGAAATGGAGGCAGTGAAGGTGAACAAGGTTTCTCATCAACCAGTAATGCAGACAATGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGACGATGAGGACGAGGAAGGAAAAGAGAATGGGCTTGATAACGACGACCCCTCGAACCAGAAGAAGCCTAGAGTAGTGTGGTCGGTTGAGTTGCACAGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCTGTGCCGAAGAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAATTCAACCAGAAAACAAAATGAAGATACAAGTGTTCATTTTGTATTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACATACATGCGCATAGGTTCACTTGATGGATACGGAGATTTACATGGCTTTGCAGGATCAGGACGGCTTCCAAACCCTTCGTTATCATCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCAGCTGGAATGAGCCTGCGAGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGCTCTATTAATAACCTTGGGAAGCTACAGCCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTGCTGCAAGGAATTCCGACATCACTCGAGCTCAGCCAGTTGCAACACAGCAAGTCCACCACTCCAATTGGAGACTTCAATATAATGAATGAGACATCCGGGTTTGGAGTTACCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAATTCAACCAATTCAGTTTCCACTGCCCCATTGATGTTACAAGGAACCGTGCCAACATTTGGAAATCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCAGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAAGGAGCAGCACAATTGTCTAGATTCTCAGCAACTTCTTTGACACCCAATGAAGCTTATCCCAACGATCAGTTGCATGCAATAAATTCGAGCATCTCACCCACCCCCTCAACGATCGGGAACATCCCTGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTGCAGGATTCAAGAGAGATGCAATGCCAGGCAGGTGTAGTTGGCAGTGTTATTCAAACTATGAACACCATGCCAAAACAGAGTTGGGAAGAGCATAAACATGATTACAGTCGAAACGTGCAGCATAATCTTAGCTCAATCAATTCTATGGTTCCTAGCAATGGCACTCTAAATCCCTTAAGCCAGAGTTTCAATCAGAATAGCCTAGTACGTGATAGAAAGGTCAGTTCATCTTTGATAGTCCCATCAAATGCTGCTCCTCTATCCTTTGCTCAACATAGTGTGGTCGAAAAATTGGGTCCTAACATGAAGACAAATGTGGATGGAAACTACCTTTTGAATCAAACAAAGTCACACGATGGATCGATTCAAGGCAGTTTCGAGTCTTTGGATGATATAATGAATGCGATGATCAAACGGCAATACGGTGATCCGAAAGCAGTTCGTGTACCATTATGTAACTCTTCGTCGGTTTGGTTTCTTGCTACGAGTCTTGAAACGATGGCGAAGAAAGAGATGGAGGTGGTGAAAGGTTTGGACCTTGAGAAGTACATGGGAAGATGGTATGAGATAGCTTCAATTCCATCAAGAAATCAGCCAAAGAATGGTGTGAACACAAGGGCTAATTATGCACTCAAAGAAGATGGAACTGTGAATGTGGTGAATGAAACTTGGAGTGATGGAAAGAGAAGTTCTATAGAAGGTGTGGCTTACAAGGCTGAGCCTTCGAGCGAGGAGGCCAAGTTCAAGGTCAAATTCTATCTGCCTCCTTTTCTTCCAATCATTCCAGTTGTTGGGAATTACTGGGTTTTGTATATTGATGATGATTATCAGTATGTCCTGATTGGAGAACCTTCAAGGAAGAATCTTTGGATCTTGTGCAGAGATACTCATCTTAACGAGGAGATATATAATCAGCTGCTTGAAAAAGCCAAGGACGAGGGCTATGATGTAAGCAAACTGCACAAGACACCACAGAGCGATCCTCCACCAGAAGATGAAGGCCCCAAAGATACCAAAGGCATATGGTGGATAAAGTCTCTTCTGGGGAAATAA | 2697 | 43.57 | MTVEGHSVASVGDDGATDRFPVGMRVLAVDDDPICLKILENLLRRCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKLEPTAKNKFPCQDKARNGGSEGEQGFSSTSNADNAKFNRKRKDQDDDEDEEGKENGLDNDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVANSTRKQNEDTSVHFVLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRIGSLDGYGDLHGFAGSGRLPNPSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCSINNLGKLQPTTMLPPNQTTNLLQGIPTSLELSQLQHSKSTTPIGDFNIMNETSGFGVTNSFPDSRVNIGNSTNSVSTAPLMLQGTVPTFGNQTSLRVDPLNGETFDIDIGSSNFLDPDPSNGNWQGAAQLSRFSATSLTPNEAYPNDQLHAINSSISPTPSTIGNIPVDFSSRSAVSAPLQDSREMQCQAGVVGSVIQTMNTMPKQSWEEHKHDYSRNVQHNLSSINSMVPSNGTLNPLSQSFNQNSLVRDRKVSSSLIVPSNAAPLSFAQHSVVEKLGPNMKTNVDGNYLLNQTKSHDGSIQGSFESLDDIMNAMIKRQYGDPKAVRVPLCNSSSVWFLATSLETMAKKEMEVVKGLDLEKYMGRWYEIASIPSRNQPKNGVNTRANYALKEDGTVNVVNETWSDGKRSSIEGVAYKAEPSSEEAKFKVKFYLPPFLPIIPVVGNYWVLYIDDDYQYVLIGEPSRKNLWILCRDTHLNEEIYNQLLEKAKDEGYDVSKLHKTPQSDPPPEDEGPKDTKGIWWIKSLLGK | 898 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1259169 | 1266086 | + | Maker00007551 | Lcy2g0162 | 624927 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0162 | 898 | SUPERFAMILY | Homeodomain-like | 209 | 261 | IPR009057 | - | |
Lcy2g0162 | 898 | FunFam | Temperature-induced lipocalin | 715 | 877 | - | - | |
Lcy2g0162 | 898 | ProSiteProfiles | Response regulatory domain profile. | 25 | 140 | IPR001789 | GO:0000160(InterPro) | |
Lcy2g0162 | 898 | CDD | REC_typeB_ARR-like | 26 | 140 | - | - | |
Lcy2g0162 | 898 | CDD | lipocalin_Blc-like | 723 | 871 | IPR047202 | - | |
Lcy2g0162 | 898 | SUPERFAMILY | Lipocalins | 718 | 879 | IPR012674 | - | |
Lcy2g0162 | 898 | Pfam | Myb-like DNA-binding domain | 213 | 257 | IPR001005 | - | |
Lcy2g0162 | 898 | MobiDBLite | consensus disorder prediction | 863 | 888 | - | - | |
Lcy2g0162 | 898 | Gene3D | - | 207 | 283 | - | - | |
Lcy2g0162 | 898 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 21 | 292 | IPR045279 | GO:0009736(InterPro) | |
Lcy2g0162 | 898 | Pfam | Response regulator receiver domain | 26 | 134 | IPR001789 | GO:0000160(InterPro) | |
Lcy2g0162 | 898 | MobiDBLite | consensus disorder prediction | 151 | 210 | - | - | |
Lcy2g0162 | 898 | MobiDBLite | consensus disorder prediction | 863 | 887 | - | - | |
Lcy2g0162 | 898 | Pfam | Lipocalin-like domain | 726 | 873 | IPR000566 | - | |
Lcy2g0162 | 898 | Gene3D | - | 24 | 190 | - | - | |
Lcy2g0162 | 898 | Gene3D | - | 700 | 875 | IPR012674 | - | |
Lcy2g0162 | 898 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 211 | 256 | IPR006447 | GO:0003677(InterPro) | |
Lcy2g0162 | 898 | ProSitePatterns | Lipocalin signature. | 725 | 738 | IPR022272 | - | |
Lcy2g0162 | 898 | SMART | REC_2 | 24 | 136 | IPR001789 | GO:0000160(InterPro) | |
Lcy2g0162 | 898 | SUPERFAMILY | CheY-like | 23 | 147 | IPR011006 | - | |
Lcy2g0162 | 898 | FunFam | Two-component response regulator | 207 | 283 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1369 | Lcy-Chr11:37414130 | Lcy2g0162 | Lcy-Chr2:1259169 | 3.21E-76 | dispersed | |
Lcy12g0777 | Lcy-Chr12:10055481 | Lcy2g0162 | Lcy-Chr2:1259169 | 3.15E-81 | dispersed | |
Lcy13g1722 | Lcy-Chr13:36191370 | Lcy2g0162 | Lcy-Chr2:1259169 | 5.58E-73 | dispersed | |
Lcy2g0162 | Lcy-Chr2:1259169 | Lcy4g2058 | Lcy-Chr4:47161794 | 5.11E-178 | dispersed | |
Lcy4g2061 | Lcy-Chr4:47180444 | Lcy2g0162 | Lcy-Chr2:1259169 | 4.82E-97 | transposed | |
Lcy2g0162 | Lcy-Chr2:1259169 | Lcy9g1879 | Lcy-Chr9:43815993 | 3.12E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19675 | None | None | None | None | Lcy | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0162 | K14491 | - | csv:101213687 | 1157.9 |