Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0162 ATGACCGTGGAGGGTCATTCCGTTGCTTCTGTCGGCGATGATGGCGCCACTGATCGTTTTCCTGTTGGGATGCGGGTTCTTGCTGTCGACGACGACCCTATTTGTCTTAAAATACTCGAGAATCTCCTCCGTAGATGCCAGTACCATGTTACGACGACGAAGCAGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGCGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCGGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTACGCACGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAAGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTCGAACCTACGGCAAAAAACAAGTTCCCTTGTCAAGATAAGGCTCGAAATGGAGGCAGTGAAGGTGAACAAGGTTTCTCATCAACCAGTAATGCAGACAATGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGACGATGAGGACGAGGAAGGAAAAGAGAATGGGCTTGATAACGACGACCCCTCGAACCAGAAGAAGCCTAGAGTAGTGTGGTCGGTTGAGTTGCACAGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCTGTGCCGAAGAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAATTCAACCAGAAAACAAAATGAAGATACAAGTGTTCATTTTGTATTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACATACATGCGCATAGGTTCACTTGATGGATACGGAGATTTACATGGCTTTGCAGGATCAGGACGGCTTCCAAACCCTTCGTTATCATCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCAGCTGGAATGAGCCTGCGAGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGCTCTATTAATAACCTTGGGAAGCTACAGCCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTGCTGCAAGGAATTCCGACATCACTCGAGCTCAGCCAGTTGCAACACAGCAAGTCCACCACTCCAATTGGAGACTTCAATATAATGAATGAGACATCCGGGTTTGGAGTTACCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAATTCAACCAATTCAGTTTCCACTGCCCCATTGATGTTACAAGGAACCGTGCCAACATTTGGAAATCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCAGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAAGGAGCAGCACAATTGTCTAGATTCTCAGCAACTTCTTTGACACCCAATGAAGCTTATCCCAACGATCAGTTGCATGCAATAAATTCGAGCATCTCACCCACCCCCTCAACGATCGGGAACATCCCTGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTGCAGGATTCAAGAGAGATGCAATGCCAGGCAGGTGTAGTTGGCAGTGTTATTCAAACTATGAACACCATGCCAAAACAGAGTTGGGAAGAGCATAAACATGATTACAGTCGAAACGTGCAGCATAATCTTAGCTCAATCAATTCTATGGTTCCTAGCAATGGCACTCTAAATCCCTTAAGCCAGAGTTTCAATCAGAATAGCCTAGTACGTGATAGAAAGGTCAGTTCATCTTTGATAGTCCCATCAAATGCTGCTCCTCTATCCTTTGCTCAACATAGTGTGGTCGAAAAATTGGGTCCTAACATGAAGACAAATGTGGATGGAAACTACCTTTTGAATCAAACAAAGTCACACGATGGATCGATTCAAGGCAGTTTCGAGTCTTTGGATGATATAATGAATGCGATGATCAAACGGCAATACGGTGATCCGAAAGCAGTTCGTGTACCATTATGTAACTCTTCGTCGGTTTGGTTTCTTGCTACGAGTCTTGAAACGATGGCGAAGAAAGAGATGGAGGTGGTGAAAGGTTTGGACCTTGAGAAGTACATGGGAAGATGGTATGAGATAGCTTCAATTCCATCAAGAAATCAGCCAAAGAATGGTGTGAACACAAGGGCTAATTATGCACTCAAAGAAGATGGAACTGTGAATGTGGTGAATGAAACTTGGAGTGATGGAAAGAGAAGTTCTATAGAAGGTGTGGCTTACAAGGCTGAGCCTTCGAGCGAGGAGGCCAAGTTCAAGGTCAAATTCTATCTGCCTCCTTTTCTTCCAATCATTCCAGTTGTTGGGAATTACTGGGTTTTGTATATTGATGATGATTATCAGTATGTCCTGATTGGAGAACCTTCAAGGAAGAATCTTTGGATCTTGTGCAGAGATACTCATCTTAACGAGGAGATATATAATCAGCTGCTTGAAAAAGCCAAGGACGAGGGCTATGATGTAAGCAAACTGCACAAGACACCACAGAGCGATCCTCCACCAGAAGATGAAGGCCCCAAAGATACCAAAGGCATATGGTGGATAAAGTCTCTTCTGGGGAAATAA 2697 43.57 MTVEGHSVASVGDDGATDRFPVGMRVLAVDDDPICLKILENLLRRCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKLEPTAKNKFPCQDKARNGGSEGEQGFSSTSNADNAKFNRKRKDQDDDEDEEGKENGLDNDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVANSTRKQNEDTSVHFVLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRIGSLDGYGDLHGFAGSGRLPNPSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCSINNLGKLQPTTMLPPNQTTNLLQGIPTSLELSQLQHSKSTTPIGDFNIMNETSGFGVTNSFPDSRVNIGNSTNSVSTAPLMLQGTVPTFGNQTSLRVDPLNGETFDIDIGSSNFLDPDPSNGNWQGAAQLSRFSATSLTPNEAYPNDQLHAINSSISPTPSTIGNIPVDFSSRSAVSAPLQDSREMQCQAGVVGSVIQTMNTMPKQSWEEHKHDYSRNVQHNLSSINSMVPSNGTLNPLSQSFNQNSLVRDRKVSSSLIVPSNAAPLSFAQHSVVEKLGPNMKTNVDGNYLLNQTKSHDGSIQGSFESLDDIMNAMIKRQYGDPKAVRVPLCNSSSVWFLATSLETMAKKEMEVVKGLDLEKYMGRWYEIASIPSRNQPKNGVNTRANYALKEDGTVNVVNETWSDGKRSSIEGVAYKAEPSSEEAKFKVKFYLPPFLPIIPVVGNYWVLYIDDDYQYVLIGEPSRKNLWILCRDTHLNEEIYNQLLEKAKDEGYDVSKLHKTPQSDPPPEDEGPKDTKGIWWIKSLLGK 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1259169 1266086 + Maker00007551 Lcy2g0162 624927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0162 898 SUPERFAMILY Homeodomain-like 209 261 IPR009057 -
Lcy2g0162 898 FunFam Temperature-induced lipocalin 715 877 - -
Lcy2g0162 898 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Lcy2g0162 898 CDD REC_typeB_ARR-like 26 140 - -
Lcy2g0162 898 CDD lipocalin_Blc-like 723 871 IPR047202 -
Lcy2g0162 898 SUPERFAMILY Lipocalins 718 879 IPR012674 -
Lcy2g0162 898 Pfam Myb-like DNA-binding domain 213 257 IPR001005 -
Lcy2g0162 898 MobiDBLite consensus disorder prediction 863 888 - -
Lcy2g0162 898 Gene3D - 207 283 - -
Lcy2g0162 898 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 292 IPR045279 GO:0009736(InterPro)
Lcy2g0162 898 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Lcy2g0162 898 MobiDBLite consensus disorder prediction 151 210 - -
Lcy2g0162 898 MobiDBLite consensus disorder prediction 863 887 - -
Lcy2g0162 898 Pfam Lipocalin-like domain 726 873 IPR000566 -
Lcy2g0162 898 Gene3D - 24 190 - -
Lcy2g0162 898 Gene3D - 700 875 IPR012674 -
Lcy2g0162 898 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 256 IPR006447 GO:0003677(InterPro)
Lcy2g0162 898 ProSitePatterns Lipocalin signature. 725 738 IPR022272 -
Lcy2g0162 898 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Lcy2g0162 898 SUPERFAMILY CheY-like 23 147 IPR011006 -
Lcy2g0162 898 FunFam Two-component response regulator 207 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1369 Lcy-Chr11:37414130 Lcy2g0162 Lcy-Chr2:1259169 3.21E-76 dispersed
Lcy12g0777 Lcy-Chr12:10055481 Lcy2g0162 Lcy-Chr2:1259169 3.15E-81 dispersed
Lcy13g1722 Lcy-Chr13:36191370 Lcy2g0162 Lcy-Chr2:1259169 5.58E-73 dispersed
Lcy2g0162 Lcy-Chr2:1259169 Lcy4g2058 Lcy-Chr4:47161794 5.11E-178 dispersed
Lcy4g2061 Lcy-Chr4:47180444 Lcy2g0162 Lcy-Chr2:1259169 4.82E-97 transposed
Lcy2g0162 Lcy-Chr2:1259169 Lcy9g1879 Lcy-Chr9:43815993 3.12E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19675 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0162 K14491 - csv:101213687 1157.9