Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0162 ATGACCGTGGAGGGTCATTCCGTTGCTTCTGTCGGCGATGATGGCGCCACTGATCGTTTTCCTGTTGGGATGCGGGTTCTTGCTGTCGACGACGACCCTATTTGTCTTAAAATACTCGAGAATCTCCTCCGTAGATGCCAGTACCATGTTACGACGACGAAGCAGTCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGCGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCGGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTACGCACGGTGCGTGTGACTATCTGTTGAAACCAGTTCGAATCGAAGAGTTGAAGAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTCGAACCTACGGCAAAAAACAAGTTCCCTTGTCAAGATAAGGCTCGAAATGGAGGCAGTGAAGGTGAACAAGGTTTCTCATCAACCAGTAATGCAGACAATGCAAAATTCAATAGGAAGCGGAAGGACCAAGATGACGATGAGGACGAGGAAGGAAAAGAGAATGGGCTTGATAACGACGACCCCTCGAACCAGAAGAAGCCTAGAGTAGTGTGGTCGGTTGAGTTGCACAGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCTGTGCCGAAGAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAATTCAACCAGAAAACAAAATGAAGATACAAGTGTTCATTTTGTATTGCAGAAATATAGGCTTTATCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACATACATGCGCATAGGTTCACTTGATGGATACGGAGATTTACATGGCTTTGCAGGATCAGGACGGCTTCCAAACCCTTCGTTATCATCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCAGCTGGAATGAGCCTGCGAGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGCTCTATTAATAACCTTGGGAAGCTACAGCCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTGCTGCAAGGAATTCCGACATCACTCGAGCTCAGCCAGTTGCAACACAGCAAGTCCACCACTCCAATTGGAGACTTCAATATAATGAATGAGACATCCGGGTTTGGAGTTACCAACAGTTTCCCTGATAGTAGAGTGAATATTGGAAATTCAACCAATTCAGTTTCCACTGCCCCATTGATGTTACAAGGAACCGTGCCAACATTTGGAAATCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCAGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAAGGAGCAGCACAATTGTCTAGATTCTCAGCAACTTCTTTGACACCCAATGAAGCTTATCCCAACGATCAGTTGCATGCAATAAATTCGAGCATCTCACCCACCCCCTCAACGATCGGGAACATCCCTGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTGCAGGATTCAAGAGAGATGCAATGCCAGGCAGGTGTAGTTGGCAGTGTTATTCAAACTATGAACACCATGCCAAAACAGAGTTGGGAAGAGCATAAACATGATTACAGTCGAAACGTGCAGCATAATCTTAGCTCAATCAATTCTATGGTTCCTAGCAATGGCACTCTAAATCCCTTAAGCCAGAGTTTCAATCAGAATAGCCTAGTACGTGATAGAAAGGTCAGTTCATCTTTGATAGTCCCATCAAATGCTGCTCCTCTATCCTTTGCTCAACATAGTGTGGTCGAAAAATTGGGTCCTAACATGAAGACAAATGTGGATGGAAACTACCTTTTGAATCAAACAAAGTCACACGATGGATCGATTCAAGGCAGTTTCGAGTCTTTGGATGATATAATGAATGCGATGATCAAACGGCAATACGGTGATCCGAAAGCAGTTCGTGTACCATTATGTAACTCTTCGTCGGTTTGGTTTCTTGCTACGAGTCTTGAAACGATGGCGAAGAAAGAGATGGAGGTGGTGAAAGGTTTGGACCTTGAGAAGTACATGGGAAGATGGTATGAGATAGCTTCAATTCCATCAAGAAATCAGCCAAAGAATGGTGTGAACACAAGGGCTAATTATGCACTCAAAGAAGATGGAACTGTGAATGTGGTGAATGAAACTTGGAGTGATGGAAAGAGAAGTTCTATAGAAGGTGTGGCTTACAAGGCTGAGCCTTCGAGCGAGGAGGCCAAGTTCAAGGTCAAATTCTATCTGCCTCCTTTTCTTCCAATCATTCCAGTTGTTGGGAATTACTGGGTTTTGTATATTGATGATGATTATCAGTATGTCCTGATTGGAGAACCTTCAAGGAAGAATCTTTGGATCTTGTGCAGAGATACTCATCTTAACGAGGAGATATATAATCAGCTGCTTGAAAAAGCCAAGGACGAGGGCTATGATGTAAGCAAACTGCACAAGACACCACAGAGCGATCCTCCACCAGAAGATGAAGGCCCCAAAGATACCAAAGGCATATGGTGGATAAAGTCTCTTCTGGGGAAATAA 2697 43.57 MTVEGHSVASVGDDGATDRFPVGMRVLAVDDDPICLKILENLLRRCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKLEPTAKNKFPCQDKARNGGSEGEQGFSSTSNADNAKFNRKRKDQDDDEDEEGKENGLDNDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVANSTRKQNEDTSVHFVLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRIGSLDGYGDLHGFAGSGRLPNPSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCSINNLGKLQPTTMLPPNQTTNLLQGIPTSLELSQLQHSKSTTPIGDFNIMNETSGFGVTNSFPDSRVNIGNSTNSVSTAPLMLQGTVPTFGNQTSLRVDPLNGETFDIDIGSSNFLDPDPSNGNWQGAAQLSRFSATSLTPNEAYPNDQLHAINSSISPTPSTIGNIPVDFSSRSAVSAPLQDSREMQCQAGVVGSVIQTMNTMPKQSWEEHKHDYSRNVQHNLSSINSMVPSNGTLNPLSQSFNQNSLVRDRKVSSSLIVPSNAAPLSFAQHSVVEKLGPNMKTNVDGNYLLNQTKSHDGSIQGSFESLDDIMNAMIKRQYGDPKAVRVPLCNSSSVWFLATSLETMAKKEMEVVKGLDLEKYMGRWYEIASIPSRNQPKNGVNTRANYALKEDGTVNVVNETWSDGKRSSIEGVAYKAEPSSEEAKFKVKFYLPPFLPIIPVVGNYWVLYIDDDYQYVLIGEPSRKNLWILCRDTHLNEEIYNQLLEKAKDEGYDVSKLHKTPQSDPPPEDEGPKDTKGIWWIKSLLGK 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1259169 1266086 + Maker00007551 Lcy2g0162 624927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0162 898 SUPERFAMILY Homeodomain-like 209 261 IPR009057 -
Lcy2g0162 898 FunFam Temperature-induced lipocalin 715 877 - -
Lcy2g0162 898 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Lcy2g0162 898 CDD REC_typeB_ARR-like 26 140 - -
Lcy2g0162 898 CDD lipocalin_Blc-like 723 871 IPR047202 -
Lcy2g0162 898 SUPERFAMILY Lipocalins 718 879 IPR012674 -
Lcy2g0162 898 Pfam Myb-like DNA-binding domain 213 257 IPR001005 -
Lcy2g0162 898 MobiDBLite consensus disorder prediction 863 888 - -
Lcy2g0162 898 Gene3D - 207 283 - -
Lcy2g0162 898 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 292 IPR045279 GO:0009736(InterPro)
Lcy2g0162 898 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Lcy2g0162 898 MobiDBLite consensus disorder prediction 151 210 - -
Lcy2g0162 898 MobiDBLite consensus disorder prediction 863 887 - -
Lcy2g0162 898 Pfam Lipocalin-like domain 726 873 IPR000566 -
Lcy2g0162 898 Gene3D - 24 190 - -
Lcy2g0162 898 Gene3D - 700 875 IPR012674 -
Lcy2g0162 898 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 256 IPR006447 GO:0003677(InterPro)
Lcy2g0162 898 ProSitePatterns Lipocalin signature. 725 738 IPR022272 -
Lcy2g0162 898 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Lcy2g0162 898 SUPERFAMILY CheY-like 23 147 IPR011006 -
Lcy2g0162 898 FunFam Two-component response regulator 207 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0162 K14491 - - csv:101213687 1157.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1369 Lcy-Chr11:37414130 Lcy2g0162 Lcy-Chr2:1259169 3.21E-76 dispersed
Lcy12g0777 Lcy-Chr12:10055481 Lcy2g0162 Lcy-Chr2:1259169 3.15E-81 dispersed
Lcy13g1722 Lcy-Chr13:36191370 Lcy2g0162 Lcy-Chr2:1259169 5.58E-73 dispersed
Lcy2g0162 Lcy-Chr2:1259169 Lcy4g2058 Lcy-Chr4:47161794 5.11E-178 dispersed
Lcy4g2061 Lcy-Chr4:47180444 Lcy2g0162 Lcy-Chr2:1259169 4.82E-97 transposed
Lcy2g0162 Lcy-Chr2:1259169 Lcy9g1879 Lcy-Chr9:43815993 3.12E-117 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1722 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.5e-53 208.4
Lcy2g0162 . 18 399 Response Regulator Gene Family AT4G31920 53.1 6.0e-86 315.8
Lcy4g2058 . 17 346 Response Regulator Gene Family AT4G31920 51.0 2.1e-78 290.8
Lcy12g0777 . 25 289 Response Regulator Gene Family AT4G31920 53.3 1.1e-71 268.5
Lcy13g1722 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.0e-62 235.7
Lcy4g2058 . 17 389 Response Regulator Gene Family AT2G25180 51.8 8.0e-84 308.9
Lcy13g1722 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.6e-68 256.9
Lcy13g1722 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.2e-46 184.5
Lcy2g0162 . 79 316 Response Regulator Gene Family AT2G01760 50.2 1.9e-44 177.2
Lcy13g1722 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.4e-62 237.7
Lcy12g0777 . 26 251 Response Regulator Gene Family AT4G16110 67.1 1.3e-79 295.0
Lcy11g1369 . 17 297 Response Regulator Gene Family AT4G16110 54.1 7.8e-72 269.2
Lcy13g1722 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.3e-58 225.3
Lcy2g0162 . 17 249 Response Regulator Gene Family AT4G16110 55.0 1.9e-57 221.5
Lcy4g2058 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.4e-52 205.3
Lcy9g1879 . 11 138 Response Regulator Gene Family AT4G16110 71.1 6.0e-48 189.9
Lcy7g0216 . 29 159 Response Regulator Gene Family AT3G48100 70.9 3.7e-48 188.7
Lcy1g1833 . 10 156 Response Regulator Gene Family AT3G48100 57.8 4.4e-41 165.2
Lcy5g0961 . 54 205 Response Regulator Gene Family AT3G48100 53.9 1.9e-39 159.8
Lcy2g0621 . 20 161 Response Regulator Gene Family AT3G48100 58.1 3.0e-37 152.5
Lcy10g1232 . 18 164 Response Regulator Gene Family AT3G48100 56.1 1.5e-36 150.2
Lcy7g0216 . 1 198 Response Regulator Gene Family AT1G59940 60.5 4.7e-54 209.1
Lcy5g0961 . 59 203 Response Regulator Gene Family AT1G59940 57.9 2.9e-40 163.3
Lcy1g1833 . 11 154 Response Regulator Gene Family AT1G59940 56.3 5.5e-39 159.1
Lcy7g0695 . 9 176 Response Regulator Gene Family AT1G59940 53.0 4.0e-37 152.9
Lcy10g1232 . 2 161 Response Regulator Gene Family AT1G59940 54.0 6.8e-37 152.1
Lcy7g0216 . 16 182 Response Regulator Gene Family AT1G10470 65.3 6.3e-51 198.4
Lcy5g0961 . 61 203 Response Regulator Gene Family AT1G10470 58.7 6.5e-40 161.8
Lcy1g1833 . 17 154 Response Regulator Gene Family AT1G10470 60.9 5.5e-39 158.7
Lcy10g1232 . 18 178 Response Regulator Gene Family AT1G10470 51.2 1.5e-36 150.6
Lcy7g0216 . 29 159 Response Regulator Gene Family AT3G48100 70.9 3.7e-48 188.7
Lcy1g1833 . 10 156 Response Regulator Gene Family AT3G48100 57.8 4.4e-41 165.2
Lcy5g0961 . 54 205 Response Regulator Gene Family AT3G48100 53.9 1.9e-39 159.8
Lcy2g0621 . 20 161 Response Regulator Gene Family AT3G48100 58.1 3.0e-37 152.5
Lcy10g1232 . 18 164 Response Regulator Gene Family AT3G48100 56.1 1.5e-36 150.2
Lcy7g0216 . 11 172 Response Regulator Gene Family AT5G62920 62.4 9.3e-47 184.1
Lcy1g1833 . 12 156 Response Regulator Gene Family AT5G62920 57.9 2.2e-40 162.9
Lcy5g0961 . 46 205 Response Regulator Gene Family AT5G62920 52.5 1.1e-39 160.6
Lcy7g0216 . 28 182 Response Regulator Gene Family AT1G19050 59.1 4.5e-42 168.7
Lcy1g1833 . 11 156 Response Regulator Gene Family AT1G19050 54.8 6.0e-39 158.3
Lcy5g0961 . 59 205 Response Regulator Gene Family AT1G19050 53.7 3.9e-38 155.6
Lcy1g1833 . 8 268 Response Regulator Gene Family AT2G41310 52.2 8.8e-60 227.6
Lcy5g0961 . 52 207 Response Regulator Gene Family AT2G41310 75.0 9.8e-59 224.2
Lcy10g1232 . 10 160 Response Regulator Gene Family AT2G41310 59.5 1.1e-41 167.5
Lcy7g0216 . 25 155 Response Regulator Gene Family AT2G41310 57.4 1.9e-38 156.8
Lcy9g1560 . 15 163 Response Regulator Gene Family AT2G41310 51.3 1.2e-37 154.1
Lcy1g1833 . 8 268 Response Regulator Gene Family AT3G57040 53.2 1.2e-62 237.3
Lcy5g0961 . 52 209 Response Regulator Gene Family AT3G57040 78.5 4.9e-61 231.9
Lcy7g0695 . 4 168 Response Regulator Gene Family AT3G57040 61.7 4.0e-47 185.7
Lcy10g1232 . 14 190 Response Regulator Gene Family AT3G57040 54.4 4.1e-44 175.6
Lcy7g0216 . 25 155 Response Regulator Gene Family AT3G57040 58.0 2.1e-40 163.3
Lcy9g1560 . 11 163 Response Regulator Gene Family AT3G57040 54.5 3.6e-40 162.5
Lcy7g0216 . 25 184 Response Regulator Gene Family AT1G74890 60.6 1.6e-44 176.8
Lcy1g1833 . 12 149 Response Regulator Gene Family AT1G74890 59.4 1.6e-39 160.2
Lcy5g0961 . 59 203 Response Regulator Gene Family AT1G74890 55.2 1.0e-38 157.5
Lcy2g0621 . 26 169 Response Regulator Gene Family AT1G74890 58.5 1.1e-37 154.1
Lcy5g0961 . 57 205 Response Regulator Gene Family AT2G40670 55.3 9.8e-40 160.6
Lcy7g0216 . 26 156 Response Regulator Gene Family AT2G40670 54.7 3.5e-37 152.1
Lcy1g1833 . 13 156 Response Regulator Gene Family AT2G40670 51.7 7.7e-37 151.0
Lcy5g0961 . 57 205 Response Regulator Gene Family AT3G56380 54.7 2.0e-39 159.5
Lcy7g0216 . 26 156 Response Regulator Gene Family AT3G56380 54.1 6.5e-38 154.5
Lcy1g1833 . 13 156 Response Regulator Gene Family AT3G56380 53.7 3.2e-37 152.1
Lcy10g1232 . 10 157 Response Regulator Gene Family AT3G56380 54.0 9.4e-37 150.6
Lcy13g1722 . 52 256 Response Regulator Gene Family AT3G16857 53.3 1.5e-53 208.4
Lcy12g0777 . 26 251 Response Regulator Gene Family AT4G16110 67.1 1.3e-79 295.0
Lcy11g1369 . 17 297 Response Regulator Gene Family AT4G16110 54.1 7.8e-72 269.2
Lcy13g1722 . 10 235 Response Regulator Gene Family AT4G16110 54.4 1.3e-58 225.3
Lcy2g0162 . 17 249 Response Regulator Gene Family AT4G16110 55.0 1.9e-57 221.5
Lcy4g2058 . 18 245 Response Regulator Gene Family AT4G16110 56.8 1.4e-52 205.3
Lcy9g1879 . 11 138 Response Regulator Gene Family AT4G16110 71.1 6.0e-48 189.9
Lcy2g0162 . 18 399 Response Regulator Gene Family AT4G31920 53.1 6.0e-86 315.8
Lcy4g2058 . 17 346 Response Regulator Gene Family AT4G31920 51.0 2.1e-78 290.8
Lcy12g0777 . 25 289 Response Regulator Gene Family AT4G31920 53.3 1.1e-71 268.5
Lcy13g1722 . 11 259 Response Regulator Gene Family AT4G31920 50.8 8.0e-62 235.7
Lcy4g2058 . 17 389 Response Regulator Gene Family AT2G25180 51.8 8.0e-84 308.9
Lcy13g1722 . 11 256 Response Regulator Gene Family AT2G25180 55.6 3.6e-68 256.9
Lcy13g1722 . 72 259 Response Regulator Gene Family AT2G01760 50.5 1.2e-46 184.5
Lcy2g0162 . 79 316 Response Regulator Gene Family AT2G01760 50.2 1.9e-44 177.2
Lcy13g1722 . 9 258 Response Regulator Gene Family AT5G58080 51.4 2.4e-62 237.7
Lcy3g0037 . 154 291 Response Regulator Gene Family AT5G60100 61.6 2.9e-45 180.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003972 2 3 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19675 None None None None Lcy TR