Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0166 ATGCAGCCCTGTAGCAGAGAAATGCAAACCTTAAACTCTCTCTTAAACCACTCCCAAATCTCCCTCCAGGATCTCCACGCCGATGCCCACCACCACCACCACCACCTGAATCCGCCCCCGCCGCCGTCGCAGCAGATCCCGCCGTCTCAGCTCCACCATTTCGATCCGGCCGTCGCCTCCCACGACGACTTCCTCGAGCAAATGCTCAATACAATCCCTTCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTCAACCCCATCAATAAGCCGCCCAGAGATATCTCCGACGACCCACACCAGAACCAGATCAACGCCACCTCTCCCGCCGCCAAGGCTGCCGTCATGCTCCAGCAACAGCTTCTCTTGTCCAGAGGCATCTCCTCCGCCGCCGGAAATGGCGTCGCTGACCATGGCCTCCCCCCCATGCCTCTCTCCCTCGGAAATGCCGACTTGGACCGCTCCCAAAACGACGTCGTCGACGGATCCTGCTTCCGGCCACCAAACTCTGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGGAAACGTGATGAATCAACCTCCGGCCAGTGGGTCCGCCGGAGTTTCTCCATCTCAGCCGAAGCAGAAGGTCAGAGCTCGCAGAGGCCAAGCCACCGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCAAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAGTTTCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTAGGGGGTGCAGCTGCTGTTGCTCCTCTCGTTGCTGACGTGTCCTCTGAGGGGGGCGGTGAGTGTATGCAAGGAAGCGGAGCACAAGGTGGCCGGAGTTCGAACGGCGGCGGAGGAAACCAAACGGCGTCGTCGAACGACAGCATGACGGTGACGGAGCAGCAGGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAGGGGAAAGGACTGTGTCTTATGCCGATCTCGCTGGCGACGGCGATTTCGACGTCAACGTGTCACTCGAGGAATCCGATGATGAACGGCGGCGGTGGACATCCGGTGATGGGATCGAACGGAGAAGGGCCGTCGTCGCCGAGCATGTCGGTGCTGACGGTGCAGTCGACGAGCATGGGGAACGGCTCCGTGAAGGACGCGGCCTCCGTATCGAAGCCGTGA 1269 58.63 MQPCSREMQTLNSLLNHSQISLQDLHADAHHHHHHLNPPPPPSQQIPPSQLHHFDPAVASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPPRDISDDPHQNQINATSPAAKAAVMLQQQLLLSRGISSAAGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPGNVMNQPPASGSAGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGRSSNGGGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPMMNGGGGHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1300427 1304178 + Maker00007702 Lcy2g0166 624931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0166 422 Pfam Helix-loop-helix DNA-binding domain 223 268 IPR011598 GO:0046983(InterPro)
Lcy2g0166 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 218 267 IPR011598 GO:0046983(InterPro)
Lcy2g0166 422 MobiDBLite consensus disorder prediction 76 103 - -
Lcy2g0166 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 278 IPR036638 GO:0046983(InterPro)
Lcy2g0166 422 SMART finulus 224 273 IPR011598 GO:0046983(InterPro)
Lcy2g0166 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 364 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy2g0166 422 MobiDBLite consensus disorder prediction 373 422 - -
Lcy2g0166 422 MobiDBLite consensus disorder prediction 390 422 - -
Lcy2g0166 422 MobiDBLite consensus disorder prediction 174 213 - -
Lcy2g0166 422 MobiDBLite consensus disorder prediction 28 51 - -
Lcy2g0166 422 Gene3D - 213 275 IPR036638 GO:0046983(InterPro)
Lcy2g0166 422 MobiDBLite consensus disorder prediction 305 330 - -
Lcy2g0166 422 MobiDBLite consensus disorder prediction 166 224 - -
Lcy2g0166 422 FunFam Transcription factor bHLH66 215 280 - -
Lcy2g0166 422 MobiDBLite consensus disorder prediction 294 330 - -
Lcy2g0166 422 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2130 Lcy-Chr13:40209447 Lcy2g0166 Lcy-Chr2:1300427 3.16E-14 dispersed
Lcy2g0166 Lcy-Chr2:1300427 Lcy3g1560 Lcy-Chr3:42640201 8.30E-55 dispersed
Lcy12g2208 Lcy-Chr12:43299472 Lcy2g0166 Lcy-Chr2:1300427 4.87E-20 transposed
Lcy4g2025 Lcy-Chr4:46783341 Lcy2g0166 Lcy-Chr2:1300427 3.28E-95 transposed
Lcy2g0166 Lcy-Chr2:1300427 Lcy4g1752 Lcy-Chr4:43489662 1.01E-15 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19676 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0166 - - - 0.0