Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0166 | ATGCAGCCCTGTAGCAGAGAAATGCAAACCTTAAACTCTCTCTTAAACCACTCCCAAATCTCCCTCCAGGATCTCCACGCCGATGCCCACCACCACCACCACCACCTGAATCCGCCCCCGCCGCCGTCGCAGCAGATCCCGCCGTCTCAGCTCCACCATTTCGATCCGGCCGTCGCCTCCCACGACGACTTCCTCGAGCAAATGCTCAATACAATCCCTTCCTGTTCGTGGCCGGACCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTCAACCCCATCAATAAGCCGCCCAGAGATATCTCCGACGACCCACACCAGAACCAGATCAACGCCACCTCTCCCGCCGCCAAGGCTGCCGTCATGCTCCAGCAACAGCTTCTCTTGTCCAGAGGCATCTCCTCCGCCGCCGGAAATGGCGTCGCTGACCATGGCCTCCCCCCCATGCCTCTCTCCCTCGGAAATGCCGACTTGGACCGCTCCCAAAACGACGTCGTCGACGGATCCTGCTTCCGGCCACCAAACTCTGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGGAAACGTGATGAATCAACCTCCGGCCAGTGGGTCCGCCGGAGTTTCTCCATCTCAGCCGAAGCAGAAGGTCAGAGCTCGCAGAGGCCAAGCCACCGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCAAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATCGACTACGTTAAGTTTCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGGTTAGGGGGTGCAGCTGCTGTTGCTCCTCTCGTTGCTGACGTGTCCTCTGAGGGGGGCGGTGAGTGTATGCAAGGAAGCGGAGCACAAGGTGGCCGGAGTTCGAACGGCGGCGGAGGAAACCAAACGGCGTCGTCGAACGACAGCATGACGGTGACGGAGCAGCAGGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAGTATTTGCAGGGGAAAGGACTGTGTCTTATGCCGATCTCGCTGGCGACGGCGATTTCGACGTCAACGTGTCACTCGAGGAATCCGATGATGAACGGCGGCGGTGGACATCCGGTGATGGGATCGAACGGAGAAGGGCCGTCGTCGCCGAGCATGTCGGTGCTGACGGTGCAGTCGACGAGCATGGGGAACGGCTCCGTGAAGGACGCGGCCTCCGTATCGAAGCCGTGA | 1269 | 58.63 | MQPCSREMQTLNSLLNHSQISLQDLHADAHHHHHHLNPPPPPSQQIPPSQLHHFDPAVASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPPRDISDDPHQNQINATSPAAKAAVMLQQQLLLSRGISSAAGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPGNVMNQPPASGSAGVSPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQGGRSSNGGGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPMMNGGGGHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1300427 | 1304178 | + | Maker00007702 | Lcy2g0166 | 624931 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0166 | 422 | Pfam | Helix-loop-helix DNA-binding domain | 223 | 268 | IPR011598 | GO:0046983(InterPro) | |
Lcy2g0166 | 422 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 218 | 267 | IPR011598 | GO:0046983(InterPro) | |
Lcy2g0166 | 422 | MobiDBLite | consensus disorder prediction | 76 | 103 | - | - | |
Lcy2g0166 | 422 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 216 | 278 | IPR036638 | GO:0046983(InterPro) | |
Lcy2g0166 | 422 | SMART | finulus | 224 | 273 | IPR011598 | GO:0046983(InterPro) | |
Lcy2g0166 | 422 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 56 | 364 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Lcy2g0166 | 422 | MobiDBLite | consensus disorder prediction | 373 | 422 | - | - | |
Lcy2g0166 | 422 | MobiDBLite | consensus disorder prediction | 390 | 422 | - | - | |
Lcy2g0166 | 422 | MobiDBLite | consensus disorder prediction | 174 | 213 | - | - | |
Lcy2g0166 | 422 | MobiDBLite | consensus disorder prediction | 28 | 51 | - | - | |
Lcy2g0166 | 422 | Gene3D | - | 213 | 275 | IPR036638 | GO:0046983(InterPro) | |
Lcy2g0166 | 422 | MobiDBLite | consensus disorder prediction | 305 | 330 | - | - | |
Lcy2g0166 | 422 | MobiDBLite | consensus disorder prediction | 166 | 224 | - | - | |
Lcy2g0166 | 422 | FunFam | Transcription factor bHLH66 | 215 | 280 | - | - | |
Lcy2g0166 | 422 | MobiDBLite | consensus disorder prediction | 294 | 330 | - | - | |
Lcy2g0166 | 422 | MobiDBLite | consensus disorder prediction | 76 | 90 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2130 | Lcy-Chr13:40209447 | Lcy2g0166 | Lcy-Chr2:1300427 | 3.16E-14 | dispersed | |
Lcy2g0166 | Lcy-Chr2:1300427 | Lcy3g1560 | Lcy-Chr3:42640201 | 8.30E-55 | dispersed | |
Lcy12g2208 | Lcy-Chr12:43299472 | Lcy2g0166 | Lcy-Chr2:1300427 | 4.87E-20 | transposed | |
Lcy4g2025 | Lcy-Chr4:46783341 | Lcy2g0166 | Lcy-Chr2:1300427 | 3.28E-95 | transposed | |
Lcy2g0166 | Lcy-Chr2:1300427 | Lcy4g1752 | Lcy-Chr4:43489662 | 1.01E-15 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19676 | None | None | None | None | Lcy | TF |
Pathway information
