Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0169 | ATGTTTGTGTATGGGCACGCCTGTTTAGAGCTCGAGTTTCAGTCTAAGACGAGAGAACCAATTAAACATCATAACTGTATATTGTACGCTGCCACCATTTTACATGTAACCACCATGAAACAGGAGTGGCCAAGTACCCTTTCAAAAACCAGGGTAAAGGTAATTGCAGAAGGTTCAGATTCAAGCTGCATCACATGCCCATTCCCTGCGAATGGATGCAGTGGTCATGGAAGGAGTTCAACCTCAAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGTCATTGGGGTGCTCAAATTTATGCCAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCTGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACAATAGAAGAGCCAAACTTCCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACAGAACCAAATTTTCCGAGTACTTGAGGGATCGTTCTGAAAGGGCACAAACATCAGCCGGCCTCTCTGCAGCAAAGATGTGTAGCAATGAAGGGACGTCTATTAAGCAACTCTTTCAGAAAGAGCTAACACCGAGCGATGTTGGTAAGTTGAACAGATTGGTGATCCCAAAGAAATATGCTGTTAAATACTTCCCTCACATATCAGCTAACACAACAGAAAATGTGGAACGTGTCGATGATGATCGCGACGTGAAGCTAGTATTTTTTGATAAAATGATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTTACTCGAGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCGAACGACACAATAGCTTTCTACGTGTGTGAAGCAGTAAAGGCAAGCGATGCTAGAACTACATTCTGTGTGGTGGATGTTAAAAATCGTAAGAATGGTGGCAACTCGGTTGAGAATGAAATGACAAGTAGTGAAATGCAGCTAGATTTGGGGCATGCACAAGTCGAGGAATTGGCGTCGGCTAAGCATGTAGATGATAAACTAGGAGATGATGCTGAAGCCAAGGGCTTCAAACTATTTGGAGTGCATATTAAGTGA | 1134 | 42.33 | MFVYGHACLELEFQSKTREPIKHHNCILYAATILHVTTMKQEWPSTLSKTRVKVIAEGSDSSCITCPFPANGCSGHGRSSTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFSEYLRDRSERAQTSAGLSAAKMCSNEGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISANTTENVERVDDDRDVKLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYVCEAVKASDARTTFCVVDVKNRKNGGNSVENEMTSSEMQLDLGHAQVEELASAKHVDDKLGDDAEAKGFKLFGVHIK | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1337994 | 1340623 | + | Maker00007623 | Lcy2g0169 | 624934 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0169 | 377 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 82 | 375 | IPR044800 | GO:0003700(InterPro) | |
Lcy2g0169 | 377 | ProSiteProfiles | AP2/ERF domain profile. | 83 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0169 | 377 | SMART | B3_2 | 205 | 320 | IPR003340 | GO:0003677(InterPro) | |
Lcy2g0169 | 377 | CDD | B3_DNA | 204 | 300 | IPR003340 | GO:0003677(InterPro) | |
Lcy2g0169 | 377 | CDD | AP2 | 82 | 140 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0169 | 377 | ProSiteProfiles | B3 DNA-binding domain profile. | 205 | 320 | IPR003340 | GO:0003677(InterPro) | |
Lcy2g0169 | 377 | SUPERFAMILY | DNA-binding pseudobarrel domain | 204 | 302 | IPR015300 | - | |
Lcy2g0169 | 377 | Gene3D | AP2/ERF domain | 82 | 139 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0169 | 377 | SUPERFAMILY | DNA-binding domain | 82 | 139 | IPR016177 | GO:0003677(InterPro) | |
Lcy2g0169 | 377 | SMART | rav1_2 | 83 | 144 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0169 | 377 | FunFam | AP2 domain-containing protein RAP2.8 | 82 | 139 | - | - | |
Lcy2g0169 | 377 | Gene3D | - | 200 | 330 | IPR015300 | - | |
Lcy2g0169 | 377 | Pfam | B3 DNA binding domain | 205 | 303 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0169 | Lcy-Chr2:1337994 | Lcy2g1157 | Lcy-Chr2:11588115 | 1.22E-102 | dispersed | |
Lcy2g0169 | Lcy-Chr2:1337994 | Lcy10g0904 | Lcy-Chr10:28501189 | 7.41E-52 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19677 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0169 | K09287 | - | csv:101212246 | 559.296 |