Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0169 ATGTTTGTGTATGGGCACGCCTGTTTAGAGCTCGAGTTTCAGTCTAAGACGAGAGAACCAATTAAACATCATAACTGTATATTGTACGCTGCCACCATTTTACATGTAACCACCATGAAACAGGAGTGGCCAAGTACCCTTTCAAAAACCAGGGTAAAGGTAATTGCAGAAGGTTCAGATTCAAGCTGCATCACATGCCCATTCCCTGCGAATGGATGCAGTGGTCATGGAAGGAGTTCAACCTCAAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGTCATTGGGGTGCTCAAATTTATGCCAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCTGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACAATAGAAGAGCCAAACTTCCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACAGAACCAAATTTTCCGAGTACTTGAGGGATCGTTCTGAAAGGGCACAAACATCAGCCGGCCTCTCTGCAGCAAAGATGTGTAGCAATGAAGGGACGTCTATTAAGCAACTCTTTCAGAAAGAGCTAACACCGAGCGATGTTGGTAAGTTGAACAGATTGGTGATCCCAAAGAAATATGCTGTTAAATACTTCCCTCACATATCAGCTAACACAACAGAAAATGTGGAACGTGTCGATGATGATCGCGACGTGAAGCTAGTATTTTTTGATAAAATGATGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTGTTTACTCGAGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCGAACGACACAATAGCTTTCTACGTGTGTGAAGCAGTAAAGGCAAGCGATGCTAGAACTACATTCTGTGTGGTGGATGTTAAAAATCGTAAGAATGGTGGCAACTCGGTTGAGAATGAAATGACAAGTAGTGAAATGCAGCTAGATTTGGGGCATGCACAAGTCGAGGAATTGGCGTCGGCTAAGCATGTAGATGATAAACTAGGAGATGATGCTGAAGCCAAGGGCTTCAAACTATTTGGAGTGCATATTAAGTGA 1134 42.33 MFVYGHACLELEFQSKTREPIKHHNCILYAATILHVTTMKQEWPSTLSKTRVKVIAEGSDSSCITCPFPANGCSGHGRSSTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFSEYLRDRSERAQTSAGLSAAKMCSNEGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISANTTENVERVDDDRDVKLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYVCEAVKASDARTTFCVVDVKNRKNGGNSVENEMTSSEMQLDLGHAQVEELASAKHVDDKLGDDAEAKGFKLFGVHIK 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1337994 1340623 + Maker00007623 Lcy2g0169 624934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0169 377 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 82 375 IPR044800 GO:0003700(InterPro)
Lcy2g0169 377 ProSiteProfiles AP2/ERF domain profile. 83 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0169 377 SMART B3_2 205 320 IPR003340 GO:0003677(InterPro)
Lcy2g0169 377 CDD B3_DNA 204 300 IPR003340 GO:0003677(InterPro)
Lcy2g0169 377 CDD AP2 82 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0169 377 ProSiteProfiles B3 DNA-binding domain profile. 205 320 IPR003340 GO:0003677(InterPro)
Lcy2g0169 377 SUPERFAMILY DNA-binding pseudobarrel domain 204 302 IPR015300 -
Lcy2g0169 377 Gene3D AP2/ERF domain 82 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0169 377 SUPERFAMILY DNA-binding domain 82 139 IPR016177 GO:0003677(InterPro)
Lcy2g0169 377 SMART rav1_2 83 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0169 377 FunFam AP2 domain-containing protein RAP2.8 82 139 - -
Lcy2g0169 377 Gene3D - 200 330 IPR015300 -
Lcy2g0169 377 Pfam B3 DNA binding domain 205 303 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0169 Lcy-Chr2:1337994 Lcy2g1157 Lcy-Chr2:11588115 1.22E-102 dispersed
Lcy2g0169 Lcy-Chr2:1337994 Lcy10g0904 Lcy-Chr10:28501189 7.41E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19677 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0169 K09287 - csv:101212246 559.296