Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0170 ATGGCGGAGAAGGACAGAGACGGTCATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGTACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACGGGGACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAGGTAGGCATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAATATTGTCGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCGATGGAGCTTGTTCGAGGCGGGGAACTGTTCTCCAAAATTTCAAGAGGTCGATTGAGAGAAGATGTCGCTAGAGTTTACTTTCAGCAGCTTATTTCTGCTATCGATTTTTGTCACAGTCGGGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGATGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTGCACACAACTTGTGGTACTCCGGCGTACGTTGCGCCGGAAGTTATCGGAAAGAAGGGATACAACGGCGCCAAAGCCGATCTATGGTCATGCGGAGTCATCCTTTACGTTCTTCTCGCCGGATTTCTCCCATTTCAGGACGACAACATTGTGGCCATGTACAGGAAGATTTACAGAGGAGATTTCAGGTGCCCGCCGTGGTTCTCACCAGAAGCCCGTCGACTCGTCACCAAACTCCTCGATCCAAATCCGAGCACCAGAATTACAACATCGAAGATCATGGAATCCTCCTGGTTCAGGAAATCCGCACCGAGGACTGTGATGACAAAAGAAGAGCAGGAATTCGACGAGAGCAACGAGAAATTGAAGCAGTCGGAGACGCTAAATGCCTTCCATATAATTTCATTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAAGAGGAGCTGAGATTTGCGACGACGAGGCCGGCGAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCAAAGGCGGGGAAATTCAGCGTCAAAAAGAGCGAATCGAGAGTCAGATTGCAAGGCCAAGAGAGCGGAAGAAAAGGGAAACTAGCGGTGGCGGCGGAGATCTTCGCCGTAACGCCGTCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGCGATACGTTAGAATACAACCAATTCTGCAGCAAAGAGCTCCGGCCGGCGCTCAAAGACATTGTCTGGACATCACCACCAGACAACTCCATGCCGGCTTGA 1293 50.04 MAEKDRDGHSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISRGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVAMYRKIYRGDFRCPPWFSPEARRLVTKLLDPNPSTRITTSKIMESSWFRKSAPRTVMTKEEQEFDESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQESGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPPDNSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1345199 1346491 - Maker00007583 Lcy2g0170 624935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0170 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Lcy2g0170 430 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0170 430 CDD CIPK_C 301 416 - -
Lcy2g0170 430 Pfam NAF domain 298 357 IPR004041 GO:0007165(InterPro)
Lcy2g0170 430 FunFam Non-specific serine/threonine protein kinase 7 299 - -
Lcy2g0170 430 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Lcy2g0170 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0170 430 Gene3D Transferase(Phosphotransferase) domain 1 99 298 - -
Lcy2g0170 430 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Lcy2g0170 430 Gene3D Kinase associated domain 1, KA1 299 421 - -
Lcy2g0170 430 CDD STKc_SnRK3 16 270 - -
Lcy2g0170 430 FunFam Non-specific serine/threonine protein kinase 295 420 - -
Lcy2g0170 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0170 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lcy2g0170 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Lcy2g0170 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165(InterPro)
Lcy2g0170 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0170 430 Coils Coil 280 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0521 Lcy-Chr12:6333534 Lcy2g0170 Lcy-Chr2:1345199 5.90E-167 dispersed
Lcy1g0262 Lcy-Chr1:2377264 Lcy2g0170 Lcy-Chr2:1345199 2.90E-180 dispersed
Lcy2g0170 Lcy-Chr2:1345199 Lcy4g2024 Lcy-Chr4:46752930 1.40E-268 dispersed
Lcy1g1613 Lcy-Chr1:16365459 Lcy2g0170 Lcy-Chr2:1345199 8.12E-151 transposed
Lcy2g0170 Lcy-Chr2:1345199 Lcy9g1887 Lcy-Chr9:43933927 1.04E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65703 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0170 - - - 0.0