Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0173 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGGCTTCTCGAGATCTGTGAAAGAGTTTATGGTACTGTTTTTCCGTCTTCTTTTGTTCTTTTTGGTCTGATTCTGATTCAATTCGGTCCTCTTTTATTACGGCCTGACTGGGACGGAAATTCTCACTTTCGATTGTTTCGATTTTTTGATTGCTGTTTTACCACGGATGCTTGGAAGGAAGAGAATTATGAAGTTTACTTAAGTAGAATAGTTGCTCAACTCCGAGAACATTTAGCAGACGCATCGTTCTTGGTGTTCAATTTTAGGAAATTAGAGATGAAAAGTCAGGTGGGCGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACAATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTATTAATGCACTGTGAACGTGGTGGTTGGCCGGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAGCAAAGGACATTGGACATGGTTTATAGGCAGGCACCTCGGGAACTTTTGCATCTTTTGTCTCCTATGAATCCAGTTCCTTCTCAACTAAGGTTTCTGCAATATGTCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGCAAAAATGTCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCTCCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAAATCGACACTTTGTGGGACGCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTATTTTCTCTGAGATGGATGCTGGAACTTGTACTGTTGCAAATGATATACTTTGCTTTGACGAGGAAGGTCTCCCCGTGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAGGAAAAGTCAGACACTAATTCTCTTTGGAGTACGCAAGTTAGTCCTTTACTCCAGTCTGCAAGTCCCAGAAAACTTCCGCAGAAGAAGTCCACATTGGAGAACAAAACTAAAATCCTAGAGAAGGAAGAGCCTATTCCAACATCAAAGTTTTCCCCGCGTGCTGCTAAAACTAAACAGAACAATGAATCTGATTCAGTATTCCAACAGGTGCCTCAATCTTTAGAATCTTTCTCACTCAGCTATGACATTTTTCAAGACTCACCAAATTCAGAGAGAAGCGACAGGACCTCCTTCAGTGCTTCGGAAGGAGAAACAGAGGTTTCTAATCTGAAAACTGCATCTTCATCTTTTCCAGATGCAGCATTGCCTGTTTCTCTTGCTCCTGAACCTCTTCAGACTAAAAGTTACCTTCTAGAAACAACAATACCACCACCTCCTCCTCTTACCCAACTTTCCACGAATATTTCTGCTGTTAATTCTCTACCTTATCCTCCCCCTCCTCCAACTGCATCACCACTTCCGTCTAATAACTTTTCAACTCTAAGACCGGATAAATCTTCACTAACCGAGGAAATAGAAAACGATTCAGAGGATCAAAGTCAGTTACCAACCATTAGCCCCCCCCTGTCTGTAACCTCTGCAATTAGTTCCTCAATACAGTCTCCTCCACCACCTCCTCCACCTCCTCCTTCTACACCTCCTTTGAAGGATACCATAGCAGTTAGAGTTAAAGCTTCTCCACCACCACCCCCTCCTTTTCCTTCAACATTAGCTTCCCATCCTACGATTGCATCCTTAGTGCCTCAGCCACCGCCGCCACCACCACCACCACCACCACCACCACCACCATCTCCTCCTTCAACATCCACTGTAAATCATAAAATTTCATCTCCAATCCCTTCACCACCACCATCACCACCTCCTCCTCCAATGGCCATCACAGATCCTAAAATTTCCTCTCCAGTGCCTCCACCGCCACCACCTCTTCCTATGACGTCCAAACAGGTTGAGAGTACTTCAACATCTCCATTTGCTCCTCCTCCACCACCACCACCACCTCTTCCTATGACGTCCAGGCAGGTTGGAGGTACTTCAACATCTTCGCCTGTTCCTCCACCGCCACCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTCCATCTGTTCCTCCTCCTCCACCACCACCTGCTTGCACAACAGGCTCCTCCTCACATGTTCCTTGTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACATCAAAATCTGGTGAATTGTTTCCTGGTTCTCTTCTTGGAAATGGTTTGTCTAGGTCTTCATCTCCAGGGCCTCCGAGTATTTCTCCATCAAGTTCAAAGGGACGAAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAACTCAAAAAACTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAACTTGAAAGTCTTTTCTCTGCAGCAGTTCCTGCTACTGATCCGAACACGAAGTCAAGTGGACGCGGTTCAGTTGGGAATAAACCTGAGAAAGTGCAACTGATCGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCGCTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTCAAGGGCTACCCCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAGTCTAAACTTCGAGTTTTCTCATTCAAGATACAATTCAGCTCTCAGGTCACTGACCTCAAAAAAAGCCTGAACTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTCAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAGGGAACAGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTCTGGATTTTACTAAAGATCTTGCAAGCTTGGAGCCTGCATCGAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCCCTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCACGAGGAAAACTGCAAGCAGATAGAGCTCGAAATGAAGAAAGCAACTGAAAGCGAAAAATCAAAGGCGGGGCACTTGCATAAGAGGACGAGGACGAGACAGTTATCACACTCACAGATTGAGATTGGCAATGTCAAGTAA 3957 43.42 MALLRKLFFRKPPDGLLEICERVYGTVFPSSFVLFGLILIQFGPLLLRPDWDGNSHFRLFRFFDCCFTTDAWKEENYEVYLSRIVAQLREHLADASFLVFNFRKLEMKSQVGDILSKYDMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHLLSPMNPVPSQLRFLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRTYKQAESELVKIDVNCHIQGDVVLECISLHDDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWDAKDKFPKDFRAEIIFSEMDAGTCTVANDILCFDEEGLPVEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDTNSLWSTQVSPLLQSASPRKLPQKKSTLENKTKILEKEEPIPTSKFSPRAAKTKQNNESDSVFQQVPQSLESFSLSYDIFQDSPNSERSDRTSFSASEGETEVSNLKTASSSFPDAALPVSLAPEPLQTKSYLLETTIPPPPPLTQLSTNISAVNSLPYPPPPPTASPLPSNNFSTLRPDKSSLTEEIENDSEDQSQLPTISPPLSVTSAISSSIQSPPPPPPPPPSTPPLKDTIAVRVKASPPPPPPFPSTLASHPTIASLVPQPPPPPPPPPPPPPPSPPSTSTVNHKISSPIPSPPPSPPPPPMAITDPKISSPVPPPPPPLPMTSKQVESTSTSPFAPPPPPPPPLPMTSRQVGGTSTSSPVPPPPPPLPSRQVGSTSTSPSVPPPPPPPACTTGSSSHVPCAPPPPTLSGRGTSKSGELFPGSLLGNGLSRSSSPGPPSISPSSSKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAETQKTGEAARAPEIDMSELESLFSAAVPATDPNTKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYPGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFSSQVTDLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFTKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKAGHLHKRTRTRQLSHSQIEIGNVK 1318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1380744 1391372 - Maker00007616 Lcy2g0173 624938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 1288 1318 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 698 721 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 461 480 - -
Lcy2g0173 1318 Pfam C2 domain of PTEN tumour-suppressor protein 235 374 IPR014020 -
Lcy2g0173 1318 SUPERFAMILY Formin homology 2 domain (FH2 domain) 909 1286 - -
Lcy2g0173 1318 Gene3D Formin, FH2 domain 895 1280 IPR042201 -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 821 849 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 775 790 - -
Lcy2g0173 1318 Gene3D - 237 377 - -
Lcy2g0173 1318 ProSiteProfiles C2 tensin-type domain profile. 236 375 IPR014020 -
Lcy2g0173 1318 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 238 375 IPR035892 -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 951 967 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 730 765 - -
Lcy2g0173 1318 Coils Coil 1270 1290 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 631 651 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 652 668 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 868 899 - -
Lcy2g0173 1318 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 96 223 IPR029021 -
Lcy2g0173 1318 ProSiteProfiles Formin homology-2 (FH2) domain profile. 896 1295 IPR015425 -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 452 500 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 485 500 - -
Lcy2g0173 1318 PANTHER FORMIN-J 756 1294 IPR051144 -
Lcy2g0173 1318 SMART PTEN_C2_2 234 374 IPR014020 -
Lcy2g0173 1318 Pfam Formin Homology 2 Domain 903 1270 IPR015425 -
Lcy2g0173 1318 Gene3D Protein tyrosine phosphatase superfamily 61 236 IPR029021 -
Lcy2g0173 1318 PRINTS Proline rich extensin signature 598 610 - -
Lcy2g0173 1318 PRINTS Proline rich extensin signature 698 723 - -
Lcy2g0173 1318 PRINTS Proline rich extensin signature 677 694 - -
Lcy2g0173 1318 PRINTS Proline rich extensin signature 655 671 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 590 900 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 518 547 - -
Lcy2g0173 1318 SMART it6_source 571 1316 IPR015425 -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 951 970 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1998 Lcy-Chr12:41352171 Lcy2g0173 Lcy-Chr2:1380744 3.77E-283 dispersed
Lcy2g0173 Lcy-Chr2:1380744 Lcy5g2518 Lcy-Chr5:47956296 1.36E-286 dispersed
Lcy2g0173 Lcy-Chr2:1380744 Lcy9g1889 Lcy-Chr9:43958041 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0173 K28090 - csv:101221713 1901.72