Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0173 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGGCTTCTCGAGATCTGTGAAAGAGTTTATGGTACTGTTTTTCCGTCTTCTTTTGTTCTTTTTGGTCTGATTCTGATTCAATTCGGTCCTCTTTTATTACGGCCTGACTGGGACGGAAATTCTCACTTTCGATTGTTTCGATTTTTTGATTGCTGTTTTACCACGGATGCTTGGAAGGAAGAGAATTATGAAGTTTACTTAAGTAGAATAGTTGCTCAACTCCGAGAACATTTAGCAGACGCATCGTTCTTGGTGTTCAATTTTAGGAAATTAGAGATGAAAAGTCAGGTGGGCGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACAATGGAAGTGCTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTATTAATGCACTGTGAACGTGGTGGTTGGCCGGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAGCAAAGGACATTGGACATGGTTTATAGGCAGGCACCTCGGGAACTTTTGCATCTTTTGTCTCCTATGAATCCAGTTCCTTCTCAACTAAGGTTTCTGCAATATGTCGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCAAAAAGAAGCAAAAATGTCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCTCCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAAATCGACACTTTGTGGGACGCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTATTTTCTCTGAGATGGATGCTGGAACTTGTACTGTTGCAAATGATATACTTTGCTTTGACGAGGAAGGTCTCCCCGTGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAGGAAAAGTCAGACACTAATTCTCTTTGGAGTACGCAAGTTAGTCCTTTACTCCAGTCTGCAAGTCCCAGAAAACTTCCGCAGAAGAAGTCCACATTGGAGAACAAAACTAAAATCCTAGAGAAGGAAGAGCCTATTCCAACATCAAAGTTTTCCCCGCGTGCTGCTAAAACTAAACAGAACAATGAATCTGATTCAGTATTCCAACAGGTGCCTCAATCTTTAGAATCTTTCTCACTCAGCTATGACATTTTTCAAGACTCACCAAATTCAGAGAGAAGCGACAGGACCTCCTTCAGTGCTTCGGAAGGAGAAACAGAGGTTTCTAATCTGAAAACTGCATCTTCATCTTTTCCAGATGCAGCATTGCCTGTTTCTCTTGCTCCTGAACCTCTTCAGACTAAAAGTTACCTTCTAGAAACAACAATACCACCACCTCCTCCTCTTACCCAACTTTCCACGAATATTTCTGCTGTTAATTCTCTACCTTATCCTCCCCCTCCTCCAACTGCATCACCACTTCCGTCTAATAACTTTTCAACTCTAAGACCGGATAAATCTTCACTAACCGAGGAAATAGAAAACGATTCAGAGGATCAAAGTCAGTTACCAACCATTAGCCCCCCCCTGTCTGTAACCTCTGCAATTAGTTCCTCAATACAGTCTCCTCCACCACCTCCTCCACCTCCTCCTTCTACACCTCCTTTGAAGGATACCATAGCAGTTAGAGTTAAAGCTTCTCCACCACCACCCCCTCCTTTTCCTTCAACATTAGCTTCCCATCCTACGATTGCATCCTTAGTGCCTCAGCCACCGCCGCCACCACCACCACCACCACCACCACCACCACCATCTCCTCCTTCAACATCCACTGTAAATCATAAAATTTCATCTCCAATCCCTTCACCACCACCATCACCACCTCCTCCTCCAATGGCCATCACAGATCCTAAAATTTCCTCTCCAGTGCCTCCACCGCCACCACCTCTTCCTATGACGTCCAAACAGGTTGAGAGTACTTCAACATCTCCATTTGCTCCTCCTCCACCACCACCACCACCTCTTCCTATGACGTCCAGGCAGGTTGGAGGTACTTCAACATCTTCGCCTGTTCCTCCACCGCCACCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTCCATCTGTTCCTCCTCCTCCACCACCACCTGCTTGCACAACAGGCTCCTCCTCACATGTTCCTTGTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGACATCAAAATCTGGTGAATTGTTTCCTGGTTCTCTTCTTGGAAATGGTTTGTCTAGGTCTTCATCTCCAGGGCCTCCGAGTATTTCTCCATCAAGTTCAAAGGGACGAAGTTTGTCACGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAACTCAAAAAACTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAACTTGAAAGTCTTTTCTCTGCAGCAGTTCCTGCTACTGATCCGAACACGAAGTCAAGTGGACGCGGTTCAGTTGGGAATAAACCTGAGAAAGTGCAACTGATCGATCACAGGCGAGCTTACAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCGCTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTCAAGGGCTACCCCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAGTCTAAACTTCGAGTTTTCTCATTCAAGATACAATTCAGCTCTCAGGTCACTGACCTCAAAAAAAGCCTGAACTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTCAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAGGGAACAGCGAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTCTGGATTTTACTAAAGATCTTGCAAGCTTGGAGCCTGCATCGAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCCCTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTTGTGAGAATGTTTAACCGAGCCCACGAGGAAAACTGCAAGCAGATAGAGCTCGAAATGAAGAAAGCAACTGAAAGCGAAAAATCAAAGGCGGGGCACTTGCATAAGAGGACGAGGACGAGACAGTTATCACACTCACAGATTGAGATTGGCAATGTCAAGTAA 3957 43.42 MALLRKLFFRKPPDGLLEICERVYGTVFPSSFVLFGLILIQFGPLLLRPDWDGNSHFRLFRFFDCCFTTDAWKEENYEVYLSRIVAQLREHLADASFLVFNFRKLEMKSQVGDILSKYDMTIMDYPQQYEGCPVLTMEVLHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHLLSPMNPVPSQLRFLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRTYKQAESELVKIDVNCHIQGDVVLECISLHDDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWDAKDKFPKDFRAEIIFSEMDAGTCTVANDILCFDEEGLPVEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDTNSLWSTQVSPLLQSASPRKLPQKKSTLENKTKILEKEEPIPTSKFSPRAAKTKQNNESDSVFQQVPQSLESFSLSYDIFQDSPNSERSDRTSFSASEGETEVSNLKTASSSFPDAALPVSLAPEPLQTKSYLLETTIPPPPPLTQLSTNISAVNSLPYPPPPPTASPLPSNNFSTLRPDKSSLTEEIENDSEDQSQLPTISPPLSVTSAISSSIQSPPPPPPPPPSTPPLKDTIAVRVKASPPPPPPFPSTLASHPTIASLVPQPPPPPPPPPPPPPPSPPSTSTVNHKISSPIPSPPPSPPPPPMAITDPKISSPVPPPPPPLPMTSKQVESTSTSPFAPPPPPPPPLPMTSRQVGGTSTSSPVPPPPPPLPSRQVGSTSTSPSVPPPPPPPACTTGSSSHVPCAPPPPTLSGRGTSKSGELFPGSLLGNGLSRSSSPGPPSISPSSSKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAETQKTGEAARAPEIDMSELESLFSAAVPATDPNTKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYPGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFSSQVTDLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFTKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKAGHLHKRTRTRQLSHSQIEIGNVK 1318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1380744 1391372 - Maker00007616 Lcy2g0173 624938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 1288 1318 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 698 721 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 461 480 - -
Lcy2g0173 1318 Pfam C2 domain of PTEN tumour-suppressor protein 235 374 IPR014020 -
Lcy2g0173 1318 SUPERFAMILY Formin homology 2 domain (FH2 domain) 909 1286 - -
Lcy2g0173 1318 Gene3D Formin, FH2 domain 895 1280 IPR042201 -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 821 849 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 775 790 - -
Lcy2g0173 1318 Gene3D - 237 377 - -
Lcy2g0173 1318 ProSiteProfiles C2 tensin-type domain profile. 236 375 IPR014020 -
Lcy2g0173 1318 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 238 375 IPR035892 -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 951 967 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 730 765 - -
Lcy2g0173 1318 Coils Coil 1270 1290 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 631 651 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 652 668 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 868 899 - -
Lcy2g0173 1318 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 96 223 IPR029021 -
Lcy2g0173 1318 ProSiteProfiles Formin homology-2 (FH2) domain profile. 896 1295 IPR015425 -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 452 500 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 485 500 - -
Lcy2g0173 1318 PANTHER FORMIN-J 756 1294 IPR051144 -
Lcy2g0173 1318 SMART PTEN_C2_2 234 374 IPR014020 -
Lcy2g0173 1318 Pfam Formin Homology 2 Domain 903 1270 IPR015425 -
Lcy2g0173 1318 Gene3D Protein tyrosine phosphatase superfamily 61 236 IPR029021 -
Lcy2g0173 1318 PRINTS Proline rich extensin signature 598 610 - -
Lcy2g0173 1318 PRINTS Proline rich extensin signature 698 723 - -
Lcy2g0173 1318 PRINTS Proline rich extensin signature 677 694 - -
Lcy2g0173 1318 PRINTS Proline rich extensin signature 655 671 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 590 900 - -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 518 547 - -
Lcy2g0173 1318 SMART it6_source 571 1316 IPR015425 -
Lcy2g0173 1318 MobiDBLite consensus disorder prediction 951 970 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0173 K28090 - - csv:101221713 1901.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1998 Lcy-Chr12:41352171 Lcy2g0173 Lcy-Chr2:1380744 3.77E-283 dispersed
Lcy2g0173 Lcy-Chr2:1380744 Lcy5g2518 Lcy-Chr5:47956296 1.36E-286 dispersed
Lcy2g0173 Lcy-Chr2:1380744 Lcy9g1889 Lcy-Chr9:43958041 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy9g0745 . 3 101 Protein tyrosine phosphatase (PTP) family AT1G71860 74.7 2.1e-41 167.2
Lcy2g0017 . 132 859 Protein tyrosine phosphatase (PTP) family AT5G23720 63.0 5.3e-244 841.6
Lcy2g0016 . 370 542 Protein tyrosine phosphatase (PTP) family AT5G23720 72.6 4.4e-65 247.3
Lcy13g0243 . 66 203 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 8.6e-44 174.1
Lcy3g0013 . 87 226 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.4e-41 166.0
Lcy3g0025 . 378 513 Protein tyrosine phosphatase (PTP) family AT3G06110 58.8 1.5e-40 163.3
Lcy4g0737 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 4.7e-72 268.1
Lcy7g1054 . 34 273 Protein tyrosine phosphatase (PTP) family AT3G10940 68.1 1.9e-99 359.8
Lcy10g0212 . 124 628 Protein tyrosine phosphatase (PTP) family AT3G01510 64.8 3.8e-195 678.3
Lcy4g0731 . 33 242 Protein tyrosine phosphatase (PTP) family AT2G32960 63.1 4.7e-73 271.9
Lcy4g2209 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.2e-79 294.3
Lcy4g2209 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.0e-45 180.6
Lcy4g0731 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.7e-70 263.1
Lcy2g1461 . 8 228 Protein tyrosine phosphatase (PTP) family AT3G02800 60.2 3.3e-74 275.4
Lcy4g0731 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 6.8e-51 198.0
Lcy7g0844 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.3e-62 238.8
Lcy10g0634 . 9 414 Protein tyrosine phosphatase (PTP) family AT5G39400 66.6 1.9e-156 549.7
Lcy4g0225 . 104 685 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 1.8e-216 749.6
Lcy1g0966 . 31 634 Protein tyrosine phosphatase (PTP) family AT3G19420 60.1 2.9e-198 689.1
Lcy1g0966 . 33 634 Protein tyrosine phosphatase (PTP) family AT3G50110 58.7 6.5e-185 644.8
Lcy4g0225 . 78 685 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.8e-179 626.7
Lcy2g0173 . 1 1298 Protein tyrosine phosphatase (PTP) family AT5G58160 51.5 3.1e-311 1065.4
Lcy8g2223 . 47 216 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 3.8e-43 174.9
Lcy9g0003 . 48 172 Protein tyrosine phosphatase (PTP) family AT5G58160 66.4 6.7e-40 164.1
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 68.1 0.0e+00 1161.7
Lcy10g1700 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.1 0.0e+00 1102.4
Lcy8g1980 . 64 269 Protein tyrosine phosphatase (PTP) family AT3G44620 59.0 3.9e-67 252.3
Lcy6g2209 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 2.3e-111 399.4
Lcy1g1532 . 1 402 Protein tyrosine phosphatase (PTP) family AT3G09100 57.4 1.9e-121 434.1
Lcy1g1532 . 5 402 Protein tyrosine phosphatase (PTP) family AT5G01290 53.9 3.8e-111 399.8
Lcy1g1532 . 86 294 Protein tyrosine phosphatase (PTP) family AT5G28210 64.9 4.3e-72 270.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33