Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0177 ATGGGAATGCGGGAGGAAAGCCGATTACTTCGTCGTCTTCAGAAAGGGAACATTGAGAACAGTGCGTGTGAGAGCAAGAGAGAAAAAGGGCCTGAAATCGAAGAGGGACAGAGCGGCGGTGCAGCGATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCGTCCAAGACTTTCCCTCAGCAAGCTGGAACCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGGCCCTGCAAGGTTGTTGAAGTTTCCACTTCAAAAACTGGGAAGCATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGAAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGTACTGACTATCAGTTGATCGATATATCTGAAGATGGTTTTGTCAGTCTGCTGACTGAAAATGGAAACACTAAGGATGACCTGAGGCTTCCCACCGATGATAATCTGCTTACGCAGGTATACAAGCGACCTTCGAGTCATTACTCTGTAGCTTTCTGCAACGTTGTAAATCGTCTCATTTATTTTCATGCCAATAGCTTAAAGATGGGTTCGCTGAAGGAAAAGATCTTGTCCTAA 624 45.83 MGMREESRLLRRLQKGNIENSACESKREKGPEIEEGQSGGAAMSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQVYKRPSSHYSVAFCNVVNRLIYFHANSLKMGSLKEKILS 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1423151 1426231 + Maker00007718 Lcy2g0177 624942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0177 207 Gene3D - 128 186 IPR012340 -
Lcy2g0177 207 NCBIfam translation initiation factor IF-5A 60 162 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lcy2g0177 207 SMART eIF_5a_2 127 171 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lcy2g0177 207 SUPERFAMILY Translation proteins SH3-like domain 57 135 IPR008991 -
Lcy2g0177 207 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 43 172 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0003746(PANTHER)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Lcy2g0177 207 FunFam Eukaryotic translation initiation factor 5A 128 182 - -
Lcy2g0177 207 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 92 99 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lcy2g0177 207 Gene3D - 43 127 IPR014722 -
Lcy2g0177 207 MobiDBLite consensus disorder prediction 41 55 - -
Lcy2g0177 207 FunFam Eukaryotic translation initiation factor 5A 43 127 - -
Lcy2g0177 207 MobiDBLite consensus disorder prediction 1 64 - -
Lcy2g0177 207 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 127 169 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Lcy2g0177 207 SUPERFAMILY Nucleic acid-binding proteins 128 174 IPR012340 -
Lcy2g0177 207 Pfam Translation initiation factor 5A-like, N-terminal 59 121 IPR048670 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1832 Lcy-Chr13:37302986 Lcy2g0177 Lcy-Chr2:1423151 8.33E-81 dispersed
Lcy2g0177 Lcy-Chr2:1423151 Lcy7g0315 Lcy-Chr7:2691353 1.27E-80 dispersed
Lcy2g0177 Lcy-Chr2:1423151 Lcy9g1891 Lcy-Chr9:43982955 1.93E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0177 K03263 - csv:101210204 261.536