Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy2g0178 | ATGGCGGAGCGCGAAGGCTTCGAAACTGACCGACTCGGAAGCTCGAAGGCTACTGCGGGACAAGAGGATGATGAGGAAGAAGAGATGGAAGTTTCGGAGGATGAATCAGAGGTGGAGTTGGAAGAAGGAGGAGGAGTGAGTGAGTTGCAACCTACTGAGTTGAGGGCCGGTTCGTCGGTTAGTGAAGCTGCGGTGAGGGGTTCTCCTTCTGAAACCCTAGCGGCGCCTTCTGCGAATCGGTCCTCGGAGAACGGTCAGTCTGATGGTAGGTTTGTTGGAAAGAGAAAGGGAAAGGGAAAGGGAATTGATTCTGTCTCGGTGGATGGGTTATTTGGTTTGCCTGTCAATTCTTCTGCGCAGTCACTCGAAGGAGCTGAATTGAAGTCTCGGTTCTGCTGGATACTGCCTGAAAGGCTGGAGTCTCAAAACCCAATCTTCACGTGTTCCCCCTTATATCCCATCTATGAGCAATCTATTGCCATTGTTGGAGGCATGGATAATGTCCAAATAACTGAAGGGGAAATTAACGTTATTCTCTTTGTGAAGATATTTAATCAAGAGGAGAATACTTTCGTTGAAAGACATTCTTTGTGTTTTCAAATTATTACGTTGATGATTGGTGCATTACAAGTTAGTCCTGCCGTCAAATTCGATTTCTCAGAACCTGGAGAGATTCGTGCAACCACTTTTGTTACTTTGATAAAACATCAGCAAGCTCCATCTTCCCGCAATGAGCCTCTGGCTGCTGAAGCAACCCAGACAGATCAGGTGCAAGAACAAAGCCAACTTCAGGTGTCAACATGTAAAGGAACTGATTCGGGTCGATCGCCAACTTCAGTTACCCAGTCTATCTCATCCTCCACAAGTCCAAGTTTGTCCGAACATAAACTGTCACCTAAGAAGGTCCATAAAGAATGTAAGCCAGAACCAAGCCAGAAAAGTTCTTCCGATCATAAAACTGCATTATCTGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGGAAATATGGTCAGAAGCAAGTTAAGAGTCCCAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGTTGTGCTAAGAAGATTGAATGTTGTGATCACTCAGGCCTTATAACAGAGGTTGTTTACAAGAGCCAACATAGCCACGATCCACCTAGGAAGATTAACAACCCCAAGGAAAGTAAGCTTGTGCCATATGTTGAGCCTGTAGTTAAAAAAATCATTGCAGAACATTCCAGAAGAATAATTAATGATTCAGATCCTCCTACGCCTTCAAAAGAAACTGTACGGGAAACAGCTTTAGTCCTTGAAAGAAAACGACAGCACTCAAATGACTCTGATGGAAACGATGAATTTAAAATTAAGGATGAGAATGACAATGATTCTGAGACAAAACAAAAAGTAAAGAAAAGCAGTGGGGGATATTCAGGTACTCCCTTAAAACCTGGAAAGAAACCCAAATTTGTGGTACATGCAGCGGGTGACGTGGGAATCTCGGGTGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGCAATCCTCATCCTAGGAACTACTACCGATGTACCTCTGCTGGGTGTCCAGTCCGTAAGCACATCGAATCAGCTGTAGAAAATCCAAATGCAGTGATTATAACATACAAGGGAGTTCATGATCATGACATGCCTGTACCGAAGAAACGACACGGTCCACCAAGTGCTCCTCTTGTAGCTGCTGCAGCTCCAGCCTCCATGAGCAATACACAACCGAAGAAAACAGATGCGGTTCAGAGCCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTAACTGGTGAGGCCTTGGACCTTGGAGGTGAGAAGGCAATGGAATCCGCTCGAACACTTTTGAGCATTGGATTTGAAATCAAGCCTTGCTGA | 1932 | 44.77 | MAEREGFETDRLGSSKATAGQEDDEEEEMEVSEDESEVELEEGGGVSELQPTELRAGSSVSEAAVRGSPSETLAAPSANRSSENGQSDGRFVGKRKGKGKGIDSVSVDGLFGLPVNSSAQSLEGAELKSRFCWILPERLESQNPIFTCSPLYPIYEQSIAIVGGMDNVQITEGEINVILFVKIFNQEENTFVERHSLCFQIITLMIGALQVSPAVKFDFSEPGEIRATTFVTLIKHQQAPSSRNEPLAAEATQTDQVQEQSQLQVSTCKGTDSGRSPTSVTQSISSSTSPSLSEHKLSPKKVHKECKPEPSQKSSSDHKTALSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECCAKKIECCDHSGLITEVVYKSQHSHDPPRKINNPKESKLVPYVEPVVKKIIAEHSRRIINDSDPPTPSKETVRETALVLERKRQHSNDSDGNDEFKIKDENDNDSETKQKVKKSSGGYSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSNTQPKKTDAVQSQISSTQWSVDAEGELTGEALDLGGEKAMESARTLLSIGFEIKPC | 643 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 1427287 | 1432991 | + | Maker00007505 | Lcy2g0178 | 624943 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy2g0178 | 643 | FunFam | WRKY transcription factor | 491 | 565 | - | - | |
| Lcy2g0178 | 643 | MobiDBLite | consensus disorder prediction | 1 | 100 | - | - | |
| Lcy2g0178 | 643 | MobiDBLite | consensus disorder prediction | 315 | 330 | - | - | |
| Lcy2g0178 | 643 | MobiDBLite | consensus disorder prediction | 296 | 314 | - | - | |
| Lcy2g0178 | 643 | SUPERFAMILY | WRKY DNA-binding domain | 329 | 390 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy2g0178 | 643 | MobiDBLite | consensus disorder prediction | 241 | 295 | - | - | |
| Lcy2g0178 | 643 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 249 | 587 | IPR044810 | GO:0003700(InterPro) | |
| Lcy2g0178 | 643 | SMART | WRKY_cls | 504 | 563 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy2g0178 | 643 | SMART | WRKY_cls | 331 | 389 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy2g0178 | 643 | MobiDBLite | consensus disorder prediction | 441 | 473 | - | - | |
| Lcy2g0178 | 643 | MobiDBLite | consensus disorder prediction | 21 | 42 | - | - | |
| Lcy2g0178 | 643 | SUPERFAMILY | WRKY DNA-binding domain | 500 | 564 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy2g0178 | 643 | MobiDBLite | consensus disorder prediction | 72 | 88 | - | - | |
| Lcy2g0178 | 643 | ProSiteProfiles | WRKY domain profile. | 332 | 390 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy2g0178 | 643 | MobiDBLite | consensus disorder prediction | 441 | 491 | - | - | |
| Lcy2g0178 | 643 | ProSiteProfiles | WRKY domain profile. | 499 | 564 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy2g0178 | 643 | Gene3D | WRKY domain | 489 | 565 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy2g0178 | 643 | Gene3D | WRKY domain | 316 | 391 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy2g0178 | 643 | Pfam | WRKY DNA -binding domain | 506 | 562 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy2g0178 | 643 | Pfam | WRKY DNA -binding domain | 333 | 388 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Lcy2g0178 | 643 | MobiDBLite | consensus disorder prediction | 241 | 335 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g0178 | Lcy-Chr2:1427287 | Lcy7g0314 | Lcy-Chr7:2684309 | 3.34E-39 | dispersed | |
| Lcy2g0178 | Lcy-Chr2:1427287 | Lcy6g1706 | Lcy-Chr6:32737111 | 7.17E-44 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 19678 | None | None | None | None | Lcy | TF |
Pathway information