Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0178 ATGGCGGAGCGCGAAGGCTTCGAAACTGACCGACTCGGAAGCTCGAAGGCTACTGCGGGACAAGAGGATGATGAGGAAGAAGAGATGGAAGTTTCGGAGGATGAATCAGAGGTGGAGTTGGAAGAAGGAGGAGGAGTGAGTGAGTTGCAACCTACTGAGTTGAGGGCCGGTTCGTCGGTTAGTGAAGCTGCGGTGAGGGGTTCTCCTTCTGAAACCCTAGCGGCGCCTTCTGCGAATCGGTCCTCGGAGAACGGTCAGTCTGATGGTAGGTTTGTTGGAAAGAGAAAGGGAAAGGGAAAGGGAATTGATTCTGTCTCGGTGGATGGGTTATTTGGTTTGCCTGTCAATTCTTCTGCGCAGTCACTCGAAGGAGCTGAATTGAAGTCTCGGTTCTGCTGGATACTGCCTGAAAGGCTGGAGTCTCAAAACCCAATCTTCACGTGTTCCCCCTTATATCCCATCTATGAGCAATCTATTGCCATTGTTGGAGGCATGGATAATGTCCAAATAACTGAAGGGGAAATTAACGTTATTCTCTTTGTGAAGATATTTAATCAAGAGGAGAATACTTTCGTTGAAAGACATTCTTTGTGTTTTCAAATTATTACGTTGATGATTGGTGCATTACAAGTTAGTCCTGCCGTCAAATTCGATTTCTCAGAACCTGGAGAGATTCGTGCAACCACTTTTGTTACTTTGATAAAACATCAGCAAGCTCCATCTTCCCGCAATGAGCCTCTGGCTGCTGAAGCAACCCAGACAGATCAGGTGCAAGAACAAAGCCAACTTCAGGTGTCAACATGTAAAGGAACTGATTCGGGTCGATCGCCAACTTCAGTTACCCAGTCTATCTCATCCTCCACAAGTCCAAGTTTGTCCGAACATAAACTGTCACCTAAGAAGGTCCATAAAGAATGTAAGCCAGAACCAAGCCAGAAAAGTTCTTCCGATCATAAAACTGCATTATCTGTTCCCAATGTTAGGACACCTGCTTCTGATGGTTACAATTGGAGGAAATATGGTCAGAAGCAAGTTAAGAGTCCCAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGTTGTGCTAAGAAGATTGAATGTTGTGATCACTCAGGCCTTATAACAGAGGTTGTTTACAAGAGCCAACATAGCCACGATCCACCTAGGAAGATTAACAACCCCAAGGAAAGTAAGCTTGTGCCATATGTTGAGCCTGTAGTTAAAAAAATCATTGCAGAACATTCCAGAAGAATAATTAATGATTCAGATCCTCCTACGCCTTCAAAAGAAACTGTACGGGAAACAGCTTTAGTCCTTGAAAGAAAACGACAGCACTCAAATGACTCTGATGGAAACGATGAATTTAAAATTAAGGATGAGAATGACAATGATTCTGAGACAAAACAAAAAGTAAAGAAAAGCAGTGGGGGATATTCAGGTACTCCCTTAAAACCTGGAAAGAAACCCAAATTTGTGGTACATGCAGCGGGTGACGTGGGAATCTCGGGTGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGCAATCCTCATCCTAGGAACTACTACCGATGTACCTCTGCTGGGTGTCCAGTCCGTAAGCACATCGAATCAGCTGTAGAAAATCCAAATGCAGTGATTATAACATACAAGGGAGTTCATGATCATGACATGCCTGTACCGAAGAAACGACACGGTCCACCAAGTGCTCCTCTTGTAGCTGCTGCAGCTCCAGCCTCCATGAGCAATACACAACCGAAGAAAACAGATGCGGTTCAGAGCCAAATTTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTAACTGGTGAGGCCTTGGACCTTGGAGGTGAGAAGGCAATGGAATCCGCTCGAACACTTTTGAGCATTGGATTTGAAATCAAGCCTTGCTGA 1932 44.77 MAEREGFETDRLGSSKATAGQEDDEEEEMEVSEDESEVELEEGGGVSELQPTELRAGSSVSEAAVRGSPSETLAAPSANRSSENGQSDGRFVGKRKGKGKGIDSVSVDGLFGLPVNSSAQSLEGAELKSRFCWILPERLESQNPIFTCSPLYPIYEQSIAIVGGMDNVQITEGEINVILFVKIFNQEENTFVERHSLCFQIITLMIGALQVSPAVKFDFSEPGEIRATTFVTLIKHQQAPSSRNEPLAAEATQTDQVQEQSQLQVSTCKGTDSGRSPTSVTQSISSSTSPSLSEHKLSPKKVHKECKPEPSQKSSSDHKTALSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECCAKKIECCDHSGLITEVVYKSQHSHDPPRKINNPKESKLVPYVEPVVKKIIAEHSRRIINDSDPPTPSKETVRETALVLERKRQHSNDSDGNDEFKIKDENDNDSETKQKVKKSSGGYSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSNTQPKKTDAVQSQISSTQWSVDAEGELTGEALDLGGEKAMESARTLLSIGFEIKPC 643
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 1427287 1432991 + Maker00007505 Lcy2g0178 624943
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0178 643 FunFam WRKY transcription factor 491 565 - -
Lcy2g0178 643 MobiDBLite consensus disorder prediction 1 100 - -
Lcy2g0178 643 MobiDBLite consensus disorder prediction 315 330 - -
Lcy2g0178 643 MobiDBLite consensus disorder prediction 296 314 - -
Lcy2g0178 643 SUPERFAMILY WRKY DNA-binding domain 329 390 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0178 643 MobiDBLite consensus disorder prediction 241 295 - -
Lcy2g0178 643 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 249 587 IPR044810 GO:0003700(InterPro)
Lcy2g0178 643 SMART WRKY_cls 504 563 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0178 643 SMART WRKY_cls 331 389 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0178 643 MobiDBLite consensus disorder prediction 441 473 - -
Lcy2g0178 643 MobiDBLite consensus disorder prediction 21 42 - -
Lcy2g0178 643 SUPERFAMILY WRKY DNA-binding domain 500 564 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0178 643 MobiDBLite consensus disorder prediction 72 88 - -
Lcy2g0178 643 ProSiteProfiles WRKY domain profile. 332 390 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0178 643 MobiDBLite consensus disorder prediction 441 491 - -
Lcy2g0178 643 ProSiteProfiles WRKY domain profile. 499 564 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0178 643 Gene3D WRKY domain 489 565 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0178 643 Gene3D WRKY domain 316 391 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0178 643 Pfam WRKY DNA -binding domain 506 562 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0178 643 Pfam WRKY DNA -binding domain 333 388 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0178 643 MobiDBLite consensus disorder prediction 241 335 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0178 Lcy-Chr2:1427287 Lcy7g0314 Lcy-Chr7:2684309 3.34E-39 dispersed
Lcy2g0178 Lcy-Chr2:1427287 Lcy6g1706 Lcy-Chr6:32737111 7.17E-44 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19678 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0178 - - - 0.0