Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0190 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTTGACCTTTCATCCTCTTCCTCATCGTCTTCATCTTCTTTTGCCTTCGGTTCCTTTTCCTCTGATCTCTCCACCCTCCGTCCCCATGGCGGTCCTTCCGCTTCCTTTTCTGTGAAGGTATGTGCCCACGATTGTCTTTTATCGATTCTATTTAGGAACTCTCGTTCTTTGATTTGGATCTTGGCCTTTGAATGTCCTGACCCTGTGTTCCGAACCCATTTGGGCGCGTTTGGTGTGGGTTTCTGGATTGGATATGTCGACGTGAAATGTTATTTGCTCGTGTTTTTGCCAATTGTGATTGGGGTTTATTGCTTCTTGATTTGTCTTGGAAGAGCTGGAGATTCACGGTTTGAGGGTCGCGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGAGAGGCTGTGGAAGTTCCAGATGATATACTAAAACTTAAACGGGATATTGATGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACCTAATCAGTCTCAGAATCGCTATTCTGAGCCAGACAATCGGGACTGGCGTGGCCGTTCTGCCCAATTCTCTGCTTCTGGAGAGGAGAGGTCCAGGGAAACAATTCGGGATAGAGATTTTGGGGGTCATTATGACTCTAGGCAGCAAGACTCAAATCAATTGAGTCGTCAAGACTCACACTCATCTTGGACCCGGTCCAATTCTAACCAAGGGGGAGGAACTCCTGCTTTAATCAAAGCCGAGGTACCATGGTCAGCTAGGAGAGGAAATCTATCTGAAAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGCTAACACCAGAGAAGTTTGATCTCCTCAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTGTGTTCTGATCTGAATCAGAAGCTACCTCAATTTCCCTCTGACGAACCTGGTGGAAGGGAAATTACTTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGATTGCCCCCGAGCAAGAGAGTGAGCGCAGAGATAAAGAAAGACTGGTCAAACTTCGTACTCTTGGAAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCGGAGAAGATTGTCCACCACATCGTGAAGGAACTTTTAGGGCCAGACAACAAAACCTGTCCCGCTGAAGAAAATGTTGAGGCCATCTGTCAGTTCTTTAACACCATAGGTAAACAGCTAGACGAGAATGCAAAATCACGTCGTATAAATGACATGTACTTCGGCCGATTGAAAGAATTGACTACACACTCTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTCCTTGATTTGCGTGCTAACAATTGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTCAATATCAGAAATAGTCGTGGCGCTGTATCCAGTTCTCCTGGGAACACCAGCCCTGGGGGCTTTCCTATCAATCGACCTGGTTTTGGGGGTATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAACTGGGAGGTACCTAGGGCCCGGCCTATACCAAGGGGGGCAGACGGATCTGGTATTCAACCTGCTGGACGTGGCCAGACACCGTTGGTTGGCAAAGCATCAACGTTGAATGCAAGGCTACTACCCCAGGGTACTGGTGGGCTCATTAGTAACAAGACTAGTGCTCTATTGCAGGGTGCAGGTGCATCTACTACTCGTCCTGTTAACTTTGGTCAAGGGTTAGAGCCCTCTGGCCAGGTTCATAAACCTACTACGGCAGCAACAGTCCTTCCACCTGCCGAGAGACCACAGGTTCCAGCTGCATCTGTAAAACAAGATGATCTCAAAAAGAAAACTCTCTCTCTTCTTGAAGAATATTTCAGTATCCGGCTTTTGGATGAAGCTCTACAGTGCGTGGAAGAACTCATGTCATCAGCTTACCACCCTGAGGTCGTTAAAGAAGCCATTTCCTTGGCCCTAGAGAAAAGCCCACCCTGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTATTCTCCAGGAAGGTTTTTACAGCTGGAGACATTGGGACTGGATGTTTGCTGTATGCTTCTGTGCTCGACGATGCAGGCATCGATTTACCAAAAGCCCCAATCAATTTTGGTGAGATCATTGGGAAACTTGTTATATCTCGTGGTTTGGATTTTCAGGTGTTGAAGGAGGCCCTTACGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACGATTAGTTCTAATGCGTCTGGGCAAGGATTATTGGATTCGTTGGCATTGGATATCGAGGCCTGTCGAAGTCTGGCATATTAA 2613 46.61 MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSFAFGSFSSDLSTLRPHGGPSASFSVKVCAHDCLLSILFRNSRSLIWILAFECPDPVFRTHLGAFGVGFWIGYVDVKCYLLVFLPIVIGVYCFLICLGRAGDSRFEGRERVRYTRDQLLQLREAVEVPDDILKLKRDIDVEIFGEEQSWSRGESNQPNQSQNRYSEPDNRDWRGRSAQFSASGEERSRETIRDRDFGGHYDSRQQDSNQLSRQDSHSSWTRSNSNQGGGTPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMIAPEQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVKELLGPDNKTCPAEENVEAICQFFNTIGKQLDENAKSRRINDMYFGRLKELTTHSQLAPRLKFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGATVNIRNSRGAVSSSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPIPRGADGSGIQPAGRGQTPLVGKASTLNARLLPQGTGGLISNKTSALLQGAGASTTRPVNFGQGLEPSGQVHKPTTAATVLPPAERPQVPAASVKQDDLKKKTLSLLEEYFSIRLLDEALQCVEELMSSAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLFSRKVFTAGDIGTGCLLYASVLDDAGIDLPKAPINFGEIIGKLVISRGLDFQVLKEALTKVEDDRFRKDIFDAVLKTISSNASGQGLLDSLALDIEACRSLAY 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1486801 1492536 - Maker00007537 Lcy2g0190 624955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0190 870 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 142 857 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Lcy2g0190 870 Pfam MA3 domain 705 817 IPR003891 -
Lcy2g0190 870 MobiDBLite consensus disorder prediction 221 237 - -
Lcy2g0190 870 MobiDBLite consensus disorder prediction 185 268 - -
Lcy2g0190 870 MobiDBLite consensus disorder prediction 185 201 - -
Lcy2g0190 870 SMART ma3_7 705 817 IPR003891 -
Lcy2g0190 870 SMART if4_15 290 515 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy2g0190 870 SUPERFAMILY ARM repeat 700 858 IPR016024 -
Lcy2g0190 870 SUPERFAMILY ARM repeat 283 518 IPR016024 -
Lcy2g0190 870 Gene3D - 698 860 - -
Lcy2g0190 870 Gene3D - 281 516 - -
Lcy2g0190 870 Pfam MIF4G domain 290 515 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Lcy2g0190 870 ProSiteProfiles MI domain profile. 704 826 IPR003891 -
Lcy2g0190 870 MobiDBLite consensus disorder prediction 238 266 - -
Lcy2g0190 870 FunFam Eukaryotic translation initiation factor isoform 4G-2 281 516 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1817 Lcy-Chr11:41937420 Lcy2g0190 Lcy-Chr2:1486801 1.66E-53 dispersed
Lcy13g0520 Lcy-Chr13:6442722 Lcy2g0190 Lcy-Chr2:1486801 3.85E-43 dispersed
Lcy2g0190 Lcy-Chr2:1486801 Lcy9g1903 Lcy-Chr9:44059927 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0190 K03260 - csv:101207520 1287.71