Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0192 ATGGAAGCCAGTGCTGGACTTGTCGCTGGATCTCACAACCGGAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCATTAAAGAACTTGGATGGTCAAGTTTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTATTTGTTGCCTGCAATGAATGTGGTTTTCCAGCCTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAACAGTGTCCTCAGTGTAAAACTAGATATAAGCGACTCAAAGGGAGTCCAAGGGTCGAGGGAGATGACGACGAAGAAGACATAGATGACATTGAACATGAATTCAACATTGATGATGAGAGGAACAAGCACAGTCATATTGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGGCCAGATGATAATGAAAATGCACAGTATGGAAGAACACAGCCAGCAAATGGTGAGTTTCCTTTATCATCTCAAGGTTATGGAGATCAGATGTTATCTTCTTCACTGCACAAACGTGTGCATCCATATCCAGTTTCTGAACCAGGGAGTGCAAGAGGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGTCAATGACCCTGACATGGCTATGATTGATGCAGCTAGACAGCCACTATCAAGGAAGGTACCAATAGCATCTAGCAAAATTAATCCTTATCGGATGGTTATTGTGGCTCGGCTTGTTATTCTTGCCTTCTTCCTTCGGTACCGAATCCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTAATATGTGAAATCTGGTTTGCGTTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTATCCCTCAGGTATGAACGAGAGGGCGAACCTAATTTGCTTGCTCCAGTGGACATCTTCGTCAGTACTGTAGATCCAATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGATTTCATGCTACGTTTCAGACGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTTCCAGGAAATGGGTGCCTTTTTGTAAGAAGTTTTCCATAGAACCACGAGCACCTGAAATGTACTTTTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTAAAGGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCTCAAGTAGCAAAAGCCGTGAAAGTTCCCCCCGAAGGATGGATAATGCAAGACGGAACACCATGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTGGGTCACAGTGGAGGCCTTGATGCAGAAGGAAATGAACTTCCCCGTCTAGTTTATGTATCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAAGCCGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCCCGAGAGGCCATGTGTTTCCTCATGGACCCTCAAGTTGGAAAGAAAGTTTGTTATGTTCAATTTCCACAAAGATTTGATGGAATAGACAGACACGATCGTTATGCCAACAGAAATACAGTCTTCTTTGATATTAACATGCGAGGTTTGGATGGAGTTCAGGGTCCTGTATATGTCGGCACAGGGTGTGTCTTTAGGAGGCAGGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGACTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAGAACTCTAAAAGTGGGGTAGATGGAGATGCTGCAGTAGTGATGGAAGATGACAAGGAGCTACTAATGTCGCAAATGAATTTTGAAAAGAAATTTGGGCAGTCGTCAATTTTTGTTACCTCAACTTTGATGGAAGAAGGCGGTGTTCCTCCCTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCACGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACTGAGTTGGGCTGGATTTACGGATCTATCACAGAGGATATTCTAACAGGTTTCAAGATGCATTGTCGTGGATGGAGATCTATATACTGCATGCCAAAGAGGCCTGCATTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTTGGATCCATTGAAATCTTTTTCAGCAACCACTGCCCTGTTTGGTATGGTTATAAGGGTGGGAAGCTAAAGTGGCTTGAAAGGTTTGCATATGTCAACACAACTGTCTATCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTAAAGGTTTTGGCTGGAATTGATACAAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGAGTTTGGAGAATTATATGCCTTTAAATGGACAACTCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGAATATCAGATGCCATAAACAATGGCTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTTTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCCGACAAAACCGCACACCGACTATAGTCGTCATATGGTCCGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCATTTGTAATGAAAACAAAGGGACCTGATACTAAGCAATGTGGACTAAATTGCTGA 3102 43.78 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPACRPCYEYERREGSQQCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNKHSHIAEAMLHGKMSYGRGPDDNENAQYGRTQPANGEFPLSSQGYGDQMLSSSLHKRVHPYPVSEPGSARGDEKREEGWKDRMDDWKLQQGNLGPEPDDVNDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFSRKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAVKVPPEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGVQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKNSKSGVDGDAAVVMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEEFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKQCGLNC 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1503640 1508522 - Maker00007662 Lcy2g0192 624957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0192 1033 CDD mRING-HC-C4C4_CesA 35 85 - -
Lcy2g0192 1033 Pfam Cellulose synthase 327 1027 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lcy2g0192 1033 SUPERFAMILY RING/U-box 21 107 - -
Lcy2g0192 1033 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 857 IPR029044 -
Lcy2g0192 1033 MobiDBLite consensus disorder prediction 135 197 - -
Lcy2g0192 1033 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Lcy2g0192 1033 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Lcy2g0192 1033 MobiDBLite consensus disorder prediction 143 168 - -
Lcy2g0192 1033 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 1002 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lcy2g0192 1033 FunFam Cellulose synthase 19 110 - -
Lcy2g0192 1033 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Lcy2g0192 1033 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 441 618 IPR029044 -
Lcy2g0192 1033 FunFam Cellulose synthase 444 618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1116 Lcy-Chr1:10222821 Lcy2g0192 Lcy-Chr2:1503640 0 dispersed
Lcy1g1957 Lcy-Chr1:23473829 Lcy2g0192 Lcy-Chr2:1503640 0 dispersed
Lcy2g0192 Lcy-Chr2:1503640 Lcy3g1908 Lcy-Chr3:46316711 0 dispersed
Lcy2g0192 Lcy-Chr2:1503640 Lcy9g0447 Lcy-Chr9:12581069 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0192 K10999 - csv:101214842 2053.1