Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0192 | ATGGAAGCCAGTGCTGGACTTGTCGCTGGATCTCACAACCGGAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCATTAAAGAACTTGGATGGTCAAGTTTGTGAGATCTGTGGTGATGAAGTGGGGCTTACTGTGGATGGTGATCTATTTGTTGCCTGCAATGAATGTGGTTTTCCAGCCTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAACAGTGTCCTCAGTGTAAAACTAGATATAAGCGACTCAAAGGGAGTCCAAGGGTCGAGGGAGATGACGACGAAGAAGACATAGATGACATTGAACATGAATTCAACATTGATGATGAGAGGAACAAGCACAGTCATATTGCAGAAGCTATGCTTCATGGCAAGATGAGCTATGGTAGAGGGCCAGATGATAATGAAAATGCACAGTATGGAAGAACACAGCCAGCAAATGGTGAGTTTCCTTTATCATCTCAAGGTTATGGAGATCAGATGTTATCTTCTTCACTGCACAAACGTGTGCATCCATATCCAGTTTCTGAACCAGGGAGTGCAAGAGGGGATGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGTCAATGACCCTGACATGGCTATGATTGATGCAGCTAGACAGCCACTATCAAGGAAGGTACCAATAGCATCTAGCAAAATTAATCCTTATCGGATGGTTATTGTGGCTCGGCTTGTTATTCTTGCCTTCTTCCTTCGGTACCGAATCCTAAATCCAGTGCATGATGCATTGGGTTTGTGGCTAACTTCTGTAATATGTGAAATCTGGTTTGCGTTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTATCCCTCAGGTATGAACGAGAGGGCGAACCTAATTTGCTTGCTCCAGTGGACATCTTCGTCAGTACTGTAGATCCAATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGATAAGATTTCATGCTACGTTTCAGACGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTTCCAGGAAATGGGTGCCTTTTTGTAAGAAGTTTTCCATAGAACCACGAGCACCTGAAATGTACTTTTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCAACATTTGTAAAGGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGGATAAATGCTCAAGTAGCAAAAGCCGTGAAAGTTCCCCCCGAAGGATGGATAATGCAAGACGGAACACCATGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTGGGTCACAGTGGAGGCCTTGATGCAGAAGGAAATGAACTTCCCCGTCTAGTTTATGTATCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAAGCCGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCCCGAGAGGCCATGTGTTTCCTCATGGACCCTCAAGTTGGAAAGAAAGTTTGTTATGTTCAATTTCCACAAAGATTTGATGGAATAGACAGACACGATCGTTATGCCAACAGAAATACAGTCTTCTTTGATATTAACATGCGAGGTTTGGATGGAGTTCAGGGTCCTGTATATGTCGGCACAGGGTGTGTCTTTAGGAGGCAGGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGACTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTTAAGAACTCTAAAAGTGGGGTAGATGGAGATGCTGCAGTAGTGATGGAAGATGACAAGGAGCTACTAATGTCGCAAATGAATTTTGAAAAGAAATTTGGGCAGTCGTCAATTTTTGTTACCTCAACTTTGATGGAAGAAGGCGGTGTTCCTCCCTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCACGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACTGAGTTGGGCTGGATTTACGGATCTATCACAGAGGATATTCTAACAGGTTTCAAGATGCATTGTCGTGGATGGAGATCTATATACTGCATGCCAAAGAGGCCTGCATTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTTGGATCCATTGAAATCTTTTTCAGCAACCACTGCCCTGTTTGGTATGGTTATAAGGGTGGGAAGCTAAAGTGGCTTGAAAGGTTTGCATATGTCAACACAACTGTCTATCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTAAAGGTTTTGGCTGGAATTGATACAAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGAGTTTGGAGAATTATATGCCTTTAAATGGACAACTCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTTGGGGTTGTTGCAGGAATATCAGATGCCATAAACAATGGCTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTTTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCCGACAAAACCGCACACCGACTATAGTCGTCATATGGTCCGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCATTTGTAATGAAAACAAAGGGACCTGATACTAAGCAATGTGGACTAAATTGCTGA | 3102 | 43.78 | MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPACRPCYEYERREGSQQCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDERNKHSHIAEAMLHGKMSYGRGPDDNENAQYGRTQPANGEFPLSSQGYGDQMLSSSLHKRVHPYPVSEPGSARGDEKREEGWKDRMDDWKLQQGNLGPEPDDVNDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFSRKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAVKVPPEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGVQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKNSKSGVDGDAAVVMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEEFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKQCGLNC | 1033 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1503640 | 1508522 | - | Maker00007662 | Lcy2g0192 | 624957 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0192 | 1033 | CDD | mRING-HC-C4C4_CesA | 35 | 85 | - | - | |
Lcy2g0192 | 1033 | Pfam | Cellulose synthase | 327 | 1027 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Lcy2g0192 | 1033 | SUPERFAMILY | RING/U-box | 21 | 107 | - | - | |
Lcy2g0192 | 1033 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 340 | 857 | IPR029044 | - | |
Lcy2g0192 | 1033 | MobiDBLite | consensus disorder prediction | 135 | 197 | - | - | |
Lcy2g0192 | 1033 | Pfam | Zinc-binding RING-finger | 27 | 103 | IPR027934 | - | |
Lcy2g0192 | 1033 | ProSiteProfiles | Zinc finger RING-type profile. | 37 | 83 | IPR001841 | - | |
Lcy2g0192 | 1033 | MobiDBLite | consensus disorder prediction | 143 | 168 | - | - | |
Lcy2g0192 | 1033 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 233 | 1002 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Lcy2g0192 | 1033 | FunFam | Cellulose synthase | 19 | 110 | - | - | |
Lcy2g0192 | 1033 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 110 | IPR013083 | - | |
Lcy2g0192 | 1033 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 441 | 618 | IPR029044 | - | |
Lcy2g0192 | 1033 | FunFam | Cellulose synthase | 444 | 618 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1116 | Lcy-Chr1:10222821 | Lcy2g0192 | Lcy-Chr2:1503640 | 0 | dispersed | |
Lcy1g1957 | Lcy-Chr1:23473829 | Lcy2g0192 | Lcy-Chr2:1503640 | 0 | dispersed | |
Lcy2g0192 | Lcy-Chr2:1503640 | Lcy3g1908 | Lcy-Chr3:46316711 | 0 | dispersed | |
Lcy2g0192 | Lcy-Chr2:1503640 | Lcy9g0447 | Lcy-Chr9:12581069 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0192 | K10999 | - | csv:101214842 | 2053.1 |