Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0205 ATGACGAAATCCACGTCGCAACAGCTTGAGATCAGGGACTCGAACAACAATGTAAATAAAAATGTCGTAATGAAGACGAAAACAAAGCGAACTCGGAGGAGTGTCCCGAGAGATTCTCCTCCTCAACGAAGCTCAATTTACCGCGGCGTTACTAGGTTTCATTTTTCGCCGATATGGTCGTTGCTTCTTGATCTTCTCTGTGTGTCGATTGATTTTGACTTCGATTTTGTTATGTTGAAATCTTTAGGCATCGGTGGACGGGGAGATATGAAGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAAAAAGGCAGACAAGTTTATCTTGGTAGGTGCATACGACGATGAGGAAGCAGCAGCACATGCTTACGACCTTGCAGCATTGAAATACTGGGGACATGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAGTCCAGAGAAGAATACATTGGGTCGTTGAGAAGAAAAAGCAGTGGGTTTTCTCGGGGGGTTTCAAAATACAGAGGTGTTGCAAGACACCATCACAATGGGAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAATATCTCTATCTTGGAACATATGAAGAAGCAGCCACAGCGTACGATATCGCGGCCATAGAGTACCGTGGACTTAACGCCGTCACCAATTTCGACCTGAGCCGTTACATCAAGTGGCTGAAACCAAGCAACGACGTCGTTTACGAAAACAACCACGTCTTAACCGTCGATTCGATCCTCCCGAGCCCTAAACAAGAACTCGACCTAGGTCTCTTCCCGTCGGACCAAAATCAAACCAGCACCGATTCGGCGATGGCGGAACCGATTGCCTTACCTCCGTCGCACCGATCGACCACCTCCACGTCGGCTCTCGGCCTCCTGCTCCAATCTTCCAAGTTCAAGGAAATGATAGAGATGAACTCGGCGACGGAGTGCCCGTCGACGCCGTCGTCGTCGGAACAGAACGAACGGCGGCCGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGATGGCTCCGGATCTTACTGCTATGGAGAAGGTGATGATGCAATTTTTAGCGAATTCAATTCTTTTGTGCCGCCGCCGTTGTCGCATTACGATTTTGACGATTAG 1170 48.03 MTKSTSQQLEIRDSNNNVNKNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRFHFSPIWSLLLDLLCVSIDFDFDFVMLKSLGIGGRGDMKLICGIRIAGMNRRTKKADKFILVGAYDDEEAAAHAYDLAALKYWGHETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYENNHVLTVDSILPSPKQELDLGLFPSDQNQTSTDSAMAEPIALPPSHRSTTSTSALGLLLQSSKFKEMIEMNSATECPSTPSSSEQNERRPCLFPDDVQTFFACDGSGSYCYGEGDDAIFSEFNSFVPPPLSHYDFDD 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1611567 1614246 + Maker00007663 Lcy2g0205 624970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0205 389 ProSiteProfiles AP2/ERF domain profile. 180 235 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0205 389 SUPERFAMILY DNA-binding domain 107 145 IPR016177 GO:0003677(InterPro)
Lcy2g0205 389 Gene3D AP2/ERF domain 90 146 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0205 389 Gene3D AP2/ERF domain 179 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0205 389 CDD AP2 179 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0205 389 SMART rav1_2 180 241 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0205 389 SMART rav1_2 46 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0205 389 ProSiteProfiles AP2/ERF domain profile. 46 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0205 389 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 32 281 - -
Lcy2g0205 389 SUPERFAMILY DNA-binding domain 179 237 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0205 Lcy-Chr2:1611567 Lcy3g1979 Lcy-Chr3:46921561 3.91E-82 dispersed
Lcy2g0205 Lcy-Chr2:1611567 Lcy13g2154 Lcy-Chr13:40451160 1.60E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19679 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0205 K09285 - csv:101219103 548.51