Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0208 ATGCTCTTGAGGAACGAATACATGCTCTTCTTCTTTTTCTTTCTTCTGCATTTCTTCCCAGCTATGGTTCCTAAACTCATCTGTTTGATCATCGTTCTCTCCTCTGCTTTCCTTTGCCTTTCCTATGAACCTCGAAACCCAGAAGTGGAAGCTCTGATTAATGTGAAGACGGCATTGAATGATCCGCACGGCGTGCTCAGCAATTGGGATGAGGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACCTGTTCTCCCGAGAATCTCGTTATAGGACTAGGAGCTCCGAGCCAGTCTCTTTCCGGGAGCTTGTCTGGTGCGATTGGAAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAACAACAACATTTCCGGTCCTATTCCCATTGAACTTGGAACTCTTCCATTGCTTCAAACGTTGGATCTCTCAAACAATCGGTTCTCTGGCCCAATACCAGCATCTTTTGGTCAGCTGAACGGTCTACGCTACCTAGACTTCATCATTTTAAAATTATTTATGAAAATAACTTGCACTTTGTTATTTTGTCTTGTAATGAGTAGGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTCCCGGTGTCTTTGGCCAAAATCCCCCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAAGTAGTCCTAGTGAAGGTTGCTCTGGCTCAGCCAATGCAGTTCCTCTTTCTTTTTCTCTAGAATCATCCCCTGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTCGGGGTCAGCCTAAGCTGTGCTTTTCTGATATTCCTAGCACTTGGAATTCTTTGGCACAAAAAAAATCACAAGACCAAAACCATCCTAGATATCAATGTAGACAATCAAGAAGTTGGACTTGTGCGCTTAGGCAACCTCAGAAACTTCACTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAAAAATATACTTGGGGCTGGAGGCTTTGGTAATGTGTACAAGGGAAAGCTAGGAAATGGGACTATGGTGGCAGTGAAACGGCTGAAAGATGTAACGGGTACCACTGGAGAGTCGCAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTTTTGGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGAGGTCTGCTGTATCTTCATGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGATGATTTCTGTGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCTGTTCGTGGCACTGTTGGCCACATCGCTCCGGAGTATCTTTCGACTGGCCAATCTTCTGAGAAGACTGACGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGAATGAGAGCTCTTGAATTTGGGAAAACAATCAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGCAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCATCCCACACTCATAATGACTTAAATGTCAACCTCTTTCATTCACGGAACAGCTGCAAAAGTACATACAACCCCACAAATGCATTAAAGAATAATGGCAATGATCGAGATCATTCAAGCATGTTAAGTTTGACGATGGATGATGACGACGACGAGCGATCTTTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 2052 45.13 MLLRNEYMLFFFFFLLHFFPAMVPKLICLIIVLSSAFLCLSYEPRNPEVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPASFGQLNGLRYLDFIILKLFMKITCTLLFCLVMSRRVNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSSPSEGCSGSANAVPLSFSLESSPGRLRSKRIAVALGVSLSCAFLIFLALGILWHKKNHKTKTILDINVDNQEVGLVRLGNLRNFTFKELQLATDHFSSKNILGAGGFGNVYKGKLGNGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHNDLNVNLFHSRNSCKSTYNPTNALKNNGNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1646940 1652126 + Maker00007710 Lcy2g0208 624973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0208 683 SMART serkin_6 338 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0208 683 MobiDBLite consensus disorder prediction 640 657 - -
Lcy2g0208 683 Gene3D Transferase(Phosphotransferase) domain 1 415 626 - -
Lcy2g0208 683 Pfam Protein tyrosine and serine/threonine kinase 341 607 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0208 683 FunFam Leucine-rich repeat receptor-like kinase 47 166 - -
Lcy2g0208 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0208 683 FunFam Somatic embryogenesis receptor-like kinase 1 415 627 - -
Lcy2g0208 683 FunFam Somatic embryogenesis receptor kinase 1 307 414 - -
Lcy2g0208 683 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515(InterPro)
Lcy2g0208 683 Pfam Leucine Rich Repeat 138 159 IPR001611 GO:0005515(InterPro)
Lcy2g0208 683 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 27 683 - -
Lcy2g0208 683 Gene3D Ribonuclease Inhibitor 45 250 IPR032675 -
Lcy2g0208 683 SUPERFAMILY L domain-like 46 229 - -
Lcy2g0208 683 Gene3D Phosphorylase Kinase; domain 1 307 414 - -
Lcy2g0208 683 MobiDBLite consensus disorder prediction 640 683 - -
Lcy2g0208 683 SUPERFAMILY Protein kinase-like (PK-like) 318 608 IPR011009 -
Lcy2g0208 683 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Lcy2g0208 683 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Lcy2g0208 683 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0208 Lcy-Chr2:1646940 Lcy7g0388 Lcy-Chr7:3288478 1.42E-211 dispersed
Lcy2g0208 Lcy-Chr2:1646940 Lcy10g2094 Lcy-Chr10:45009126 2.93E-217 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65707 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0208 - - - 0.0