Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0208 | ATGCTCTTGAGGAACGAATACATGCTCTTCTTCTTTTTCTTTCTTCTGCATTTCTTCCCAGCTATGGTTCCTAAACTCATCTGTTTGATCATCGTTCTCTCCTCTGCTTTCCTTTGCCTTTCCTATGAACCTCGAAACCCAGAAGTGGAAGCTCTGATTAATGTGAAGACGGCATTGAATGATCCGCACGGCGTGCTCAGCAATTGGGATGAGGACTCTGTGGACCCTTGCAGTTGGGCAATGATCACCTGTTCTCCCGAGAATCTCGTTATAGGACTAGGAGCTCCGAGCCAGTCTCTTTCCGGGAGCTTGTCTGGTGCGATTGGAAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAACAACAACATTTCCGGTCCTATTCCCATTGAACTTGGAACTCTTCCATTGCTTCAAACGTTGGATCTCTCAAACAATCGGTTCTCTGGCCCAATACCAGCATCTTTTGGTCAGCTGAACGGTCTACGCTACCTAGACTTCATCATTTTAAAATTATTTATGAAAATAACTTGCACTTTGTTATTTTGTCTTGTAATGAGTAGGAGGGTGAACAATAATAGCTTGTCCGGGCCTTTCCCGGTGTCTTTGGCCAAAATCCCCCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGAACATTCAATGTGGTGGGAAATCCGATGATTTGTGGAAGTAGTCCTAGTGAAGGTTGCTCTGGCTCAGCCAATGCAGTTCCTCTTTCTTTTTCTCTAGAATCATCCCCTGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTCGGGGTCAGCCTAAGCTGTGCTTTTCTGATATTCCTAGCACTTGGAATTCTTTGGCACAAAAAAAATCACAAGACCAAAACCATCCTAGATATCAATGTAGACAATCAAGAAGTTGGACTTGTGCGCTTAGGCAACCTCAGAAACTTCACTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAAAAATATACTTGGGGCTGGAGGCTTTGGTAATGTGTACAAGGGAAAGCTAGGAAATGGGACTATGGTGGCAGTGAAACGGCTGAAAGATGTAACGGGTACCACTGGAGAGTCGCAGTTCCGCACAGAGTTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTTTTGGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGAGGTCTGCTGTATCTTCATGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGATGATTTCTGTGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTGACCACTGCTGTTCGTGGCACTGTTGGCCACATCGCTCCGGAGTATCTTTCGACTGGCCAATCTTCTGAGAAGACTGACGTGTTTGGGTTTGGCATTCTTTTGATAGAGCTAATAACTGGAATGAGAGCTCTTGAATTTGGGAAAACAATCAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGCAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGGGATGGCCTTGTTGAGAAATGGGCTGCATCCCACACTCATAATGACTTAAATGTCAACCTCTTTCATTCACGGAACAGCTGCAAAAGTACATACAACCCCACAAATGCATTAAAGAATAATGGCAATGATCGAGATCATTCAAGCATGTTAAGTTTGACGATGGATGATGACGACGACGAGCGATCTTTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG | 2052 | 45.13 | MLLRNEYMLFFFFFLLHFFPAMVPKLICLIIVLSSAFLCLSYEPRNPEVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPASFGQLNGLRYLDFIILKLFMKITCTLLFCLVMSRRVNNNSLSGPFPVSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSSPSEGCSGSANAVPLSFSLESSPGRLRSKRIAVALGVSLSCAFLIFLALGILWHKKNHKTKTILDINVDNQEVGLVRLGNLRNFTFKELQLATDHFSSKNILGAGGFGNVYKGKLGNGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAASHTHNDLNVNLFHSRNSCKSTYNPTNALKNNGNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR | 683 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1646940 | 1652126 | + | Maker00007710 | Lcy2g0208 | 624973 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0208 | 683 | SMART | serkin_6 | 338 | 607 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy2g0208 | 683 | MobiDBLite | consensus disorder prediction | 640 | 657 | - | - | |
Lcy2g0208 | 683 | Gene3D | Transferase(Phosphotransferase) domain 1 | 415 | 626 | - | - | |
Lcy2g0208 | 683 | Pfam | Protein tyrosine and serine/threonine kinase | 341 | 607 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy2g0208 | 683 | FunFam | Leucine-rich repeat receptor-like kinase | 47 | 166 | - | - | |
Lcy2g0208 | 683 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 457 | 469 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy2g0208 | 683 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 415 | 627 | - | - | |
Lcy2g0208 | 683 | FunFam | Somatic embryogenesis receptor kinase 1 | 307 | 414 | - | - | |
Lcy2g0208 | 683 | Pfam | Leucine Rich Repeat | 113 | 135 | IPR001611 | GO:0005515(InterPro) | |
Lcy2g0208 | 683 | Pfam | Leucine Rich Repeat | 138 | 159 | IPR001611 | GO:0005515(InterPro) | |
Lcy2g0208 | 683 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 27 | 683 | - | - | |
Lcy2g0208 | 683 | Gene3D | Ribonuclease Inhibitor | 45 | 250 | IPR032675 | - | |
Lcy2g0208 | 683 | SUPERFAMILY | L domain-like | 46 | 229 | - | - | |
Lcy2g0208 | 683 | Gene3D | Phosphorylase Kinase; domain 1 | 307 | 414 | - | - | |
Lcy2g0208 | 683 | MobiDBLite | consensus disorder prediction | 640 | 683 | - | - | |
Lcy2g0208 | 683 | SUPERFAMILY | Protein kinase-like (PK-like) | 318 | 608 | IPR011009 | - | |
Lcy2g0208 | 683 | Pfam | Leucine rich repeat N-terminal domain | 46 | 85 | IPR013210 | - | |
Lcy2g0208 | 683 | ProSitePatterns | Protein kinases ATP-binding region signature. | 344 | 366 | IPR017441 | GO:0005524(InterPro) | |
Lcy2g0208 | 683 | ProSiteProfiles | Protein kinase domain profile. | 338 | 613 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0208 | Lcy-Chr2:1646940 | Lcy7g0388 | Lcy-Chr7:3288478 | 1.42E-211 | dispersed | |
Lcy2g0208 | Lcy-Chr2:1646940 | Lcy10g2094 | Lcy-Chr10:45009126 | 2.93E-217 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65707 | None | None | None | None | Lcy | PK |
Pathway information
