Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0228 ATGGCACAGCACCACCTCCAAGGCTCCAAGTCACCAACACAGTGTTGCGAGAAGATCGATGAAAAGGGTCAAGAGTCAAGAGGGGAGCTCCCAAAAGTCCAAAATCATTCTGAAGTCGATTGGAATCAATGGAAATCACTTAAAGTTTTGGGACCTGTTCTGCTTGTTGTGAAAATGTGGTTTTATTCTGATCACAAAAAACATAAGAAATCTGCCATTGGAAACAACAATGAAGCAGTGCAACTTGAGAAGTCATCATCAAAATACTATATTCCGTCGTCAACATTCTTAATACCTGACAATGGACTAGGGGGCAGCAAAAGTAAATTTGCCGAAACTTTTAGAACTGAGAAGTCCAAGGTGTTTCCAGAGGACCATGAACCATGGAGCAAAAGAATACTGGACCCTGGTAGCAAAATTGTTTTGAAATGGAACCGGGTGTTCATTTGCTCATGCTTATTGGCACTCTTTGTTGACCCGCTGTATCTTTACTTGCCTGCTTTGGTTGGGAATGGGCAATCCTCATGTGTGAGGACAGACTGGAAATTGCGAATTGTTGTGACTTGTTTCCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATAAAGTTCAGAACAGCTTATGTTGCTCCTAGCTCTCGAGTTTTTGGGAGAGGTGAGCTTGTGATGGATTCAAAGATGATAGCAAAGAGGTATATTAGATCTGACTTTTTTGTTGATCTAATTGCCACCCTGCCTCTTCCTCAGGGCATTGACAAAGTGGATGGTTGGTGGAAAAGCTTAAAGTTCATGAGAAAGTTAGCTGCTCTTAAGCCTATTCTGAGAGAGTTGAACTTTGGAGTGTTAGGTGATACTCTTTTCAGGGAGTGGGAACAGACTTGTAACGACTCCTCTACCTTGCAGATTGTCATCTGGTTCATCATACCTGCAACAAGAAGCCGTCTAACTGATCATAAAAACAATGCTCTTGCACTTATTGTTCTGCTTCAATATATTCCAAGATTGTATTTGATTTTCCCTCTAAGTTCAGAAATCATCAAAGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGAGCTGCTTATAATCTTCTACTCTATATGTTGGCTAGCCATGTTCTCGGTGCTACATGGTATTTGTTGTCAGTTGATAGATATACATCATGCTGGAAATCATTTTGTAGGAAGAAGGAATATAATCCACTAGAATGCAACCTAACTTTTTTTGATTGCGATACATTTAACCTTAATGACCGCAATACATGGGCAAATAGTACACTTGTTTTTGACAAATGTGGCCCTGATGGAATTTTCAAGTATGGCATTTTTGGGAATGCAATGTCAAAGAATGTTGTCTCTTCAAGCTTTATTGAAAAGTACTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAGAATTTGGAAACAACCACTTTCATTGGTGAGACACTGTTTGCTGTGCTTATTGCCATCTTAGGCCTTGTATTATTTGCCCATCTGATTGGGAATATGCAGACATATCTGCAATCCCTCACTGTGAGGCTTGAAGAATGGAGACTAAAGCGAAGAGACACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGTGTTCGACGGTTTGTACAATATAAGTGGGTAGCAACTCGAGGAGTTGATGAAGAAGCCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGAGATATTCAATGCCACCTATGTCTAGATCTTGTCCGAAGAGTCCCTTTCTTTGCGCAGATGGATGATCAGCTACTTGATGCAATGTGTGAACGCCTAGTATCCTCCTTGAGCACCGAAGGTACCTATATTGTACGAGAGGGTGACCCAGTAACAGAGATGCTGTTCATTATCCGAGGCAGATTGGAGAGTTCTACTACAAATGGAGGTCGGTCTGGTTTCTTCAACTCCATAATGTTGCGTCCTGGAGACTTTTGTGGGGAGGAACTACTTTCTTGGGCCTTGCACCCAAAATCCACCACCAACTTGCCCTCCTCAACTAGAACAGTCAGAGCGCTCAATGAAGTTGAAGCTTTTGCACTCCGCGCTGAAGATCTTAAATTTGTGGCCAACCAGTTTAGACGTCTGCACAGTAAAAAGTTGCAGCACACATTCCGCTTTTACTCTCATCATTGGAGAACATGGGCAGCTTGCTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTCTTGATGAAGGAATCATTTACATTATCTGAAGAAGTGGCTGATGAAACTGGCCAAGGAGAAGGGGAACAATTTTCTGTTGTTTCAAATCCTTCTCAGACAAAAATGTATCTGGATGTAACCTTACTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGTGCTCAGAGAATGAAAGATGACTTGCCAAAGTTACAGAAGCCCGATGAACCCGACTTTTCCATTGAGCCGGATAGATAA 2493 42.2 MAQHHLQGSKSPTQCCEKIDEKGQESRGELPKVQNHSEVDWNQWKSLKVLGPVLLVVKMWFYSDHKKHKKSAIGNNNEAVQLEKSSSKYYIPSSTFLIPDNGLGGSKSKFAETFRTEKSKVFPEDHEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLYLYLPALVGNGQSSCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDSKMIAKRYIRSDFFVDLIATLPLPQGIDKVDGWWKSLKFMRKLAALKPILRELNFGVLGDTLFREWEQTCNDSSTLQIVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNPLECNLTFFDCDTFNLNDRNTWANSTLVFDKCGPDGIFKYGIFGNAMSKNVVSSSFIEKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEEAILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAMCERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSIMLRPGDFCGEELLSWALHPKSTTNLPSSTRTVRALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLSEEVADETGQGEGEQFSVVSNPSQTKMYLDVTLLASRFAANTRRGAQRMKDDLPKLQKPDEPDFSIEPDR 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1801172 1810000 + Maker00007561 Lcy2g0228 624993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0228 830 ProSiteProfiles cAMP/cGMP binding motif profile. 593 677 IPR000595 -
Lcy2g0228 830 SUPERFAMILY Voltage-gated potassium channels 309 515 - -
Lcy2g0228 830 Pfam Ion transport protein 145 293 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g0228 830 Pfam Ion transport protein 308 520 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy2g0228 830 SMART cnmp_10 593 724 IPR000595 -
Lcy2g0228 830 SUPERFAMILY Voltage-gated potassium channels 136 292 - -
Lcy2g0228 830 SUPERFAMILY cAMP-binding domain-like 523 715 IPR018490 -
Lcy2g0228 830 Gene3D Jelly Rolls 591 711 IPR014710 -
Lcy2g0228 830 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 112 810 - -
Lcy2g0228 830 FunFam Cyclic nucleotide-gated ion channel 1 520 584 - -
Lcy2g0228 830 Gene3D Helix hairpin bin 521 584 - -
Lcy2g0228 830 CDD CAP_ED 593 724 IPR000595 -
Lcy2g0228 830 MobiDBLite consensus disorder prediction 804 830 - -
Lcy2g0228 830 Pfam Cyclic nucleotide-binding domain 616 705 IPR000595 -
Lcy2g0228 830 FunFam Cyclic nucleotide-gated ion channel 1 591 709 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0228 Lcy-Chr2:1801172 Lcy9g1763 Lcy-Chr9:42827391 0 dispersed
Lcy2g0228 Lcy-Chr2:1801172 Lcy10g0256 Lcy-Chr10:4165205 5.64E-260 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0228 K27629 - csv:101218643 1346.26