Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0229 ATGTTGATAACCGTCAGAGAAGCTGCTGTAGCTTCTTCCTCGCCCCTTTGCTTCACCCTCTCCACTCGATCTCTTACCAATTCTAAGCGCTTTCCAAGACCTAGAATTTCAGTCAGCCGAGCTTCCTTCTCTGTTCCTAACAAGCCCAGCGCCACCAAATCCTGGAATCTTGGCCTCATTTCCAACAGAGTATATGGTGTTGTTACTGGGCTGCAGCTTTGCATATTTTTGTCCTCTCCAAATTTTCCATGCTTCTCTGGCAGTACAGGAGTTCCCCTGAAGAATTGGGGAGAACTTTCTGAGAGCTCAGTTTTTGATCCCTTGGGCATCCGTCCAGATCTTTCTACTGAATTAAGTAGTACATGGGAAAATTTTCTTGGCTTTTTTGGGCAAACATTTGACAGTGCTTCAAGCACAAAAAAAGATAAATCTCCCTCAGCACGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGACTTCTTCAAAGGTCCATTGCCAGGAAAATTTCTACAGCTCTTGGGCTATTTAGCACTATCAAGGCTTGGAATCTATATCCCTCTTGGTGGAGTGAACCGAGAGGCTTTTGTTGGGAACTTGGATCAGAACAGCTTATTGAGCACTTTAGATTCATTTTCTGGAGGAGGCATTGGTAGGCTAGGGATATGCTCCCTTGGCATTGTTCCCTTCATCAATGCACAAATTGTCTTCCAGCTTCTTGCACAAATTTATCCAAAATTGCAAGAGCTTCAGAAAAGAGAAGGCGAAGCAGGGCGGAAGAAAATTCTTCAATATACTAGATATGCCTCAGTTGGGTTTGCAATTGTACAAGCAATTGGCCAAGTTCTCTACCTTCGCCCCTATGTTAATGATTTTAGTACAGAGTGGGTGCTTTCTTCTGTTACGTTATTAACACTTGGCTCAGTCATAACAACGTACATTGGGGAACGGATCACAGACCTAAAGCTAGGAAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATTTACCAGCATCCTTTGGAAGAACAGCTGCACAGGCTTTCCAGGATGGTAACTATGTTGGATTGGTTGGTATAATAATCTCCTTCTTTCTATTGGTACTTGGAATTGTATATGTTCAGGAAGCAGAAAGGAAAATACCGCTTAACTATGCTTCAAGATACATGAGCAGAGGTGGAGGGCTTCAGAAATCTGCTTACCTGCCCTTCAAGGTAAATAGTTCTGGTGTAATGCCGATCATTTTTTCTACATCAACATTGGCCCTTCCGGGTACTCTAGCCCGCTTCACCGGTTTATCCGTCCTAAAGAAGGCTGCACTTGCTTTAAATCCAGGAGGTTCATTCTATCTGCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTCCTACAGTTGGATCCCGATGATGTGAGTGAACAATTGAAGCGTCAGGGTGCTTCAATTCCCCTCGTCCGTCCAGGCAAAAGTACAGCTTCATTTCTGAAAGCGGTTCTAAGTCGGATTTCAGTACTTGGTTCAGCCTTCTTGGCAATCCTTGCTGCTGGTCCAGCGGTGATTGAGCAAACAACACACCTAACTGCATTTCGAGGATTTGCGGGAACCTCTGTTCTTATTCTTGTTGGTTGTGCTACGGACACTGCCAGAAAAGTACAAGCTGAGATTATCTCCCAGAAGTACAAAAACATAGAGTTCTATGACATTGATAGGTATACTCCTTGA 1749 43.8 MLITVREAAVASSSPLCFTLSTRSLTNSKRFPRPRISVSRASFSVPNKPSATKSWNLGLISNRVYGVVTGLQLCIFLSSPNFPCFSGSTGVPLKNWGELSESSVFDPLGIRPDLSTELSSTWENFLGFFGQTFDSASSTKKDKSPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQELQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTAAQAFQDGNYVGLVGIIISFFLLVLGIVYVQEAERKIPLNYASRYMSRGGGLQKSAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSVLKKAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYTP 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1806180 1812846 - Maker00007643 Lcy2g0229 624994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0229 582 PRINTS Preprotein translocase SecY subunit signature 265 288 - -
Lcy2g0229 582 PRINTS Preprotein translocase SecY subunit signature 414 433 - -
Lcy2g0229 582 PRINTS Preprotein translocase SecY subunit signature 453 475 - -
Lcy2g0229 582 PRINTS Preprotein translocase SecY subunit signature 323 346 - -
Lcy2g0229 582 PRINTS Preprotein translocase SecY subunit signature 542 560 - -
Lcy2g0229 582 PRINTS Preprotein translocase SecY subunit signature 223 243 - -
Lcy2g0229 582 PRINTS Preprotein translocase SecY subunit signature 173 191 - -
Lcy2g0229 582 PRINTS Preprotein translocase SecY subunit signature 297 322 - -
Lcy2g0229 582 PRINTS Preprotein translocase SecY subunit signature 508 526 - -
Lcy2g0229 582 ProSitePatterns Protein secY signature 2. 316 333 IPR030659 -
Lcy2g0229 582 Hamap Protein translocase subunit SecY [secY]. 161 573 IPR026593 -
Lcy2g0229 582 Gene3D SecY subunit domain 164 569 IPR023201 -
Lcy2g0229 582 FunFam Preprotein translocase subunit SECY, chloroplastic 164 569 - -
Lcy2g0229 582 NCBIfam preprotein translocase subunit SecY 172 569 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Lcy2g0229 582 ProSitePatterns Protein secY signature 1. 224 243 IPR030659 -
Lcy2g0229 582 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 164 572 IPR002208 GO:0005048(PANTHER)|GO:0006616(PANTHER)|GO:0008320(PANTHER)|GO:0009535(PANTHER)|GO:0015031(InterPro)|GO:0016020(InterPro)
Lcy2g0229 582 SUPERFAMILY Preprotein translocase SecY subunit 165 563 IPR023201 -
Lcy2g0229 582 Pfam SecY 225 556 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0229 K10956 - csv:101222431 974.926