Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0241 ATGGGTTCTTCTTTCAGCTGCTGCGATTCTGAGAAAGTAGACCAAGGGTTCCGTGGAGGCAACAGTTCATGGAGGATGTATACATACAAGGAGTTGCACGCGGCTACGAACGGTTTCCATGACGACAACAAGCTTGGAGAAGGAGGATTTGGAAGTGTTTACTGGGGAAAGACAACCGATGGGCTTCAGATAGCGGTGAAGAAGCTGAAAGCGATGAATTACAAGGCAGAAATGGAGTTTGCTGTGGAAGTGGAAGTGCTGGCGAGGCTAAGGCACAAGAATTTGTTGGGTCTGAGGGGTTACTGCGTGGGCACTGATCAGAGGCTTATTGTTTATGATTACATGCCAAATCTCAGCTTGCTGTCTCATCTCCATGGCCAATTCGCTTGTGAAGGTCACTTGGATTGGAAAAGAAGAATGAAGATCGCTCTTGGCTCTGCTGAAGGCATTTTGTATTTGCACCAAGAAGTAACACCCCACATAATCCATAGAGATATCAAAGCCAGCAATGTGCTATTAGATTCAGATTTCGAGCCACTGGTCGCCGATTTCGGGTTTGCAAAATTAATACCAGAGGGTGTAAGTCACATGACAACTCGAGTGAAAGGAACATTAGGATATCTTGCTCCAGAATACGCCATGTGGGGTAAAGTTTCGGAGAGTTGTGACGTTTTCAGTTATGGAATTCTTCTGCTGGAGCTCATGACGGGAAGGAAGCCAATCGAAAGACTCCCTGGAGGAGCAAAGAGAACGATTTCAGAGTGGGTTAACAACACAATAAGCAAAGACAGATTCAAAGATTTAGCCGATCGGAAGCTGAAGGGACACCTCAATTGGAAACAATTCGAACATGTAATGCATTTGGCAATCATGTGCGTGCAAAACGAACCAGACAAGCGGCCTACCATAAGAGAAGTGGTGGAATGCTTGAAAGGGTTGATGGTTGAGGGTGAAAACAAGCAGGGAAACAAAGCGATGCTAATGAGTATTCGAAGTGTTAGATACATTGATGACGAGGCCTTTGAATGTGATCAGCCAAGCAAAGAACATCATGGCGGTGGAGAAGAGAGTTTTGATTATGGGGTTTTTAGTGCCATTGAGGAGCAGAAGATGAGAGATCCTTACAAACACCGTGAGAATTGGAGATTGAAGGGTTAA 1158 45.16 MGSSFSCCDSEKVDQGFRGGNSSWRMYTYKELHAATNGFHDDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGQFACEGHLDWKRRMKIALGSAEGILYLHQEVTPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVFSYGILLLELMTGRKPIERLPGGAKRTISEWVNNTISKDRFKDLADRKLKGHLNWKQFEHVMHLAIMCVQNEPDKRPTIREVVECLKGLMVEGENKQGNKAMLMSIRSVRYIDDEAFECDQPSKEHHGGGEESFDYGVFSAIEEQKMRDPYKHRENWRLKG 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1906555 1908413 + Maker00007635 Lcy2g0241 625006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0241 385 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524(InterPro)
Lcy2g0241 385 Gene3D Transferase(Phosphotransferase) domain 1 115 328 - -
Lcy2g0241 385 ProSiteProfiles Protein kinase domain profile. 39 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0241 385 Pfam Protein kinase domain 39 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy2g0241 385 FunFam PTI1-like tyrosine-protein kinase At3g15890 115 326 - -
Lcy2g0241 385 FunFam PTI1-like tyrosine-protein kinase At3g15890 11 114 - -
Lcy2g0241 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy2g0241 385 SUPERFAMILY Protein kinase-like (PK-like) 22 314 IPR011009 -
Lcy2g0241 385 Gene3D Phosphorylase Kinase; domain 1 9 114 - -
Lcy2g0241 385 PANTHER OS01G0750732 PROTEIN 22 323 IPR050885 -
Lcy2g0241 385 CDD STKc_IRAK 45 313 - -
Lcy2g0241 385 SMART serkin_6 39 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0562 Lcy-Chr12:6852684 Lcy2g0241 Lcy-Chr2:1906555 1.72E-141 dispersed
Lcy2g0241 Lcy-Chr2:1906555 Lcy6g0213 Lcy-Chr6:1940605 3.02E-140 dispersed
Lcy2g0241 Lcy-Chr2:1906555 Lcy7g0396 Lcy-Chr7:3370972 3.05E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65708 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0241 - - - 0.0