Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0242 | ATGGGGATTGAGGGTGAAACTCTTGTAAAGGGTTTCGGTGGCGGATGGGGCGTCGTCGCTAAACCATGCGACTCTTGCAAGACTGGCCCTGCCGCCGTTTACTGCCGACCTGACTCGGCTTTTCTCTGCCTCAACTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCCTCTCGTCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAAGCTCCTGCCGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGTGTCTCCTGCGACGCCGATATTCACTCCGCTAACCCACTCGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACTCGGTCGAGTCAGTGGTCAAGCCCTCTTCGGTTTTCAATTTTCTTTTGCCTACTGAAACCAACGCCAGTGGCTGCGTCGGCGGACATCACCACGAGGAAGTGGAGGTTGCCTCTTGGCTTTTGTCCAACCCGCCTTTCAACTCTAAGCTCGCTGACGGCCCTGAAATCAAGCCCCCTGCTGATCATATGTTCTTCACTGAAATGGATTCTTTTATCGATTTTGATTACCCAAATCCAGTCAACAACAACAACAGCGCAATCAACGACAGCGTCGTCCCCGTTCAGACGAAGCCACTCTCTTCGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGACTTTTGCAGATCCAAGCTGAATTCATTCCGCTATCAACCTCAATCCCTGAGCCACAGTGTTTCGTCTTCTTCCCTAGATGTTGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCGTACCCGTTGGGTCAAACGGTGAGCAGCGGCGCGGATTCGAGTCTACCGATTTCGGGATCTGGCAACCAAGCGACTCAATTAGTTGGAATCGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACAATCCGGTACGCCTCGAGAAAAGCTTATGCGGAAACCCGACCCAGAATCAAAGGCCGGTTCGCAAAACGGACTGATATGCTATCAGAGGTCGATGAAATCTATGGGTCGGCTGCTTCGTCTGAGTTCTTGGCGGACTTCCAATACGGCGTCGTACCATCGTTTTGA | 1128 | 53.1 | MGIEGETLVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLNCDTKIHGANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVSCDADIHSANPLARRHERVPVEPFFDSVESVVKPSSVFNFLLPTETNASGCVGGHHHEEVEVASWLLSNPPFNSKLADGPEIKPPADHMFFTEMDSFIDFDYPNPVNNNNSAINDSVVPVQTKPLSSPVINHTHSPENCYDIDFCRSKLNSFRYQPQSLSHSVSSSSLDVGVVPEGNSMSDISYPLGQTVSSGADSSLPISGSGNQATQLVGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSEFLADFQYGVVPSF | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1914128 | 1916381 | - | Maker00007696 | Lcy2g0242 | 625007 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0242 | 375 | CDD | Bbox1_BBX-like | 66 | 108 | IPR049808 | - | |
Lcy2g0242 | 375 | CDD | Bbox1_BBX-like | 22 | 65 | IPR049808 | - | |
Lcy2g0242 | 375 | ProSiteProfiles | Zinc finger B-box type profile. | 23 | 65 | IPR000315 | GO:0008270(InterPro) | |
Lcy2g0242 | 375 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 16 | 360 | IPR045281 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER) | |
Lcy2g0242 | 375 | ProSiteProfiles | Zinc finger B-box type profile. | 61 | 108 | IPR000315 | GO:0008270(InterPro) | |
Lcy2g0242 | 375 | SMART | bboxneu5 | 18 | 65 | IPR000315 | GO:0008270(InterPro) | |
Lcy2g0242 | 375 | SMART | bboxneu5 | 66 | 108 | IPR000315 | GO:0008270(InterPro) | |
Lcy2g0242 | 375 | Pfam | B-box zinc finger | 62 | 108 | IPR000315 | GO:0008270(InterPro) | |
Lcy2g0242 | 375 | ProSiteProfiles | CCT domain profile. | 302 | 344 | IPR010402 | GO:0005515(InterPro) | |
Lcy2g0242 | 375 | Pfam | CCT motif | 302 | 344 | IPR010402 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0242 | Lcy-Chr2:1914128 | Lcy3g0399 | Lcy-Chr3:13014973 | 2.57E-31 | dispersed | |
Lcy13g1849 | Lcy-Chr13:37431636 | Lcy2g0242 | Lcy-Chr2:1914128 | 2.73E-78 | transposed | |
Lcy2g0242 | Lcy-Chr2:1914128 | Lcy4g1662 | Lcy-Chr4:41924170 | 3.08E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19682 | None | None | None | None | Lcy | TF |
Pathway information
