Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0242 ATGGGGATTGAGGGTGAAACTCTTGTAAAGGGTTTCGGTGGCGGATGGGGCGTCGTCGCTAAACCATGCGACTCTTGCAAGACTGGCCCTGCCGCCGTTTACTGCCGACCTGACTCGGCTTTTCTCTGCCTCAACTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCCTCTCGTCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAAGCTCCTGCCGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGTGTCTCCTGCGACGCCGATATTCACTCCGCTAACCCACTCGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACTCGGTCGAGTCAGTGGTCAAGCCCTCTTCGGTTTTCAATTTTCTTTTGCCTACTGAAACCAACGCCAGTGGCTGCGTCGGCGGACATCACCACGAGGAAGTGGAGGTTGCCTCTTGGCTTTTGTCCAACCCGCCTTTCAACTCTAAGCTCGCTGACGGCCCTGAAATCAAGCCCCCTGCTGATCATATGTTCTTCACTGAAATGGATTCTTTTATCGATTTTGATTACCCAAATCCAGTCAACAACAACAACAGCGCAATCAACGACAGCGTCGTCCCCGTTCAGACGAAGCCACTCTCTTCGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGACTTTTGCAGATCCAAGCTGAATTCATTCCGCTATCAACCTCAATCCCTGAGCCACAGTGTTTCGTCTTCTTCCCTAGATGTTGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCGTACCCGTTGGGTCAAACGGTGAGCAGCGGCGCGGATTCGAGTCTACCGATTTCGGGATCTGGCAACCAAGCGACTCAATTAGTTGGAATCGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACAATCCGGTACGCCTCGAGAAAAGCTTATGCGGAAACCCGACCCAGAATCAAAGGCCGGTTCGCAAAACGGACTGATATGCTATCAGAGGTCGATGAAATCTATGGGTCGGCTGCTTCGTCTGAGTTCTTGGCGGACTTCCAATACGGCGTCGTACCATCGTTTTGA 1128 53.1 MGIEGETLVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLNCDTKIHGANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVSCDADIHSANPLARRHERVPVEPFFDSVESVVKPSSVFNFLLPTETNASGCVGGHHHEEVEVASWLLSNPPFNSKLADGPEIKPPADHMFFTEMDSFIDFDYPNPVNNNNSAINDSVVPVQTKPLSSPVINHTHSPENCYDIDFCRSKLNSFRYQPQSLSHSVSSSSLDVGVVPEGNSMSDISYPLGQTVSSGADSSLPISGSGNQATQLVGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSEFLADFQYGVVPSF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1914128 1916381 - Maker00007696 Lcy2g0242 625007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0242 375 CDD Bbox1_BBX-like 66 108 IPR049808 -
Lcy2g0242 375 CDD Bbox1_BBX-like 22 65 IPR049808 -
Lcy2g0242 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
Lcy2g0242 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 360 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lcy2g0242 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
Lcy2g0242 375 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
Lcy2g0242 375 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
Lcy2g0242 375 Pfam B-box zinc finger 62 108 IPR000315 GO:0008270(InterPro)
Lcy2g0242 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515(InterPro)
Lcy2g0242 375 Pfam CCT motif 302 344 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0242 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0242 Lcy-Chr2:1914128 Lcy3g0399 Lcy-Chr3:13014973 2.57E-31 dispersed
Lcy13g1849 Lcy-Chr13:37431636 Lcy2g0242 Lcy-Chr2:1914128 2.73E-78 transposed
Lcy2g0242 Lcy-Chr2:1914128 Lcy4g1662 Lcy-Chr4:41924170 3.08E-67 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1849 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.8 3.5e-82 302.8
Lcy2g0242 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.7 4.3e-56 216.1
Lcy2g0242 . 5 376 C2C2-CO-like Transcription Factor Family AT5G57660 51.2 9.0e-67 251.5
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT3G07650 58.2 1.4e-99 360.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 2.3e-89 326.6
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy8g1342 . 1 421 C2C2-CO-like Transcription Factor Family AT5G48250 56.7 1.6e-93 340.5
Lcy4g0405 . 1 409 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 1.8e-86 317.0
Lcy3g0981 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.3 9.0e-53 204.9
Lcy8g1159 . 1 204 C2C2-CO-like Transcription Factor Family AT1G75540 52.6 3.3e-47 186.4
Lcy1g0650 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 3.7e-50 195.3
Lcy6g0892 . 1 200 C2C2-CO-like Transcription Factor Family AT2G21320 51.7 3.6e-45 178.7
Lcy1g0650 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.1 7.5e-49 191.0
Lcy8g1175 . 1 216 C2C2-CO-like Transcription Factor Family AT4G38960 50.5 4.1e-47 185.3
Lcy6g0892 . 1 199 C2C2-CO-like Transcription Factor Family AT4G38960 53.9 5.4e-47 184.9
Lcy3g0981 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 7.1e-55 211.5
Lcy13g1934 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 7.1e-47 184.9
Lcy8g1159 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 54.1 1.2e-43 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19682 None None None None Lcy TF