Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0242 ATGGGGATTGAGGGTGAAACTCTTGTAAAGGGTTTCGGTGGCGGATGGGGCGTCGTCGCTAAACCATGCGACTCTTGCAAGACTGGCCCTGCCGCCGTTTACTGCCGACCTGACTCGGCTTTTCTCTGCCTCAACTGCGACACCAAAATTCACGGCGCTAATAAGCTCGCCTCTCGTCACGAGCGCGTCTGGATGTGCGAGGTCTGTGAACAAGCTCCTGCCGTCGTCATGTGCAAGGCCGATGCTGCGGCTCTCTGTGTCTCCTGCGACGCCGATATTCACTCCGCTAACCCACTCGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACTCGGTCGAGTCAGTGGTCAAGCCCTCTTCGGTTTTCAATTTTCTTTTGCCTACTGAAACCAACGCCAGTGGCTGCGTCGGCGGACATCACCACGAGGAAGTGGAGGTTGCCTCTTGGCTTTTGTCCAACCCGCCTTTCAACTCTAAGCTCGCTGACGGCCCTGAAATCAAGCCCCCTGCTGATCATATGTTCTTCACTGAAATGGATTCTTTTATCGATTTTGATTACCCAAATCCAGTCAACAACAACAACAGCGCAATCAACGACAGCGTCGTCCCCGTTCAGACGAAGCCACTCTCTTCGCCGGTGATCAACCATACCCACTCCCCTGAAAATTGCTACGACATCGACTTTTGCAGATCCAAGCTGAATTCATTCCGCTATCAACCTCAATCCCTGAGCCACAGTGTTTCGTCTTCTTCCCTAGATGTTGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCGTACCCGTTGGGTCAAACGGTGAGCAGCGGCGCGGATTCGAGTCTACCGATTTCGGGATCTGGCAACCAAGCGACTCAATTAGTTGGAATCGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACAATCCGGTACGCCTCGAGAAAAGCTTATGCGGAAACCCGACCCAGAATCAAAGGCCGGTTCGCAAAACGGACTGATATGCTATCAGAGGTCGATGAAATCTATGGGTCGGCTGCTTCGTCTGAGTTCTTGGCGGACTTCCAATACGGCGTCGTACCATCGTTTTGA 1128 53.1 MGIEGETLVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLNCDTKIHGANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVSCDADIHSANPLARRHERVPVEPFFDSVESVVKPSSVFNFLLPTETNASGCVGGHHHEEVEVASWLLSNPPFNSKLADGPEIKPPADHMFFTEMDSFIDFDYPNPVNNNNSAINDSVVPVQTKPLSSPVINHTHSPENCYDIDFCRSKLNSFRYQPQSLSHSVSSSSLDVGVVPEGNSMSDISYPLGQTVSSGADSSLPISGSGNQATQLVGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSEFLADFQYGVVPSF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1914128 1916381 - Maker00007696 Lcy2g0242 625007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0242 375 CDD Bbox1_BBX-like 66 108 IPR049808 -
Lcy2g0242 375 CDD Bbox1_BBX-like 22 65 IPR049808 -
Lcy2g0242 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
Lcy2g0242 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 360 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Lcy2g0242 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
Lcy2g0242 375 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
Lcy2g0242 375 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
Lcy2g0242 375 Pfam B-box zinc finger 62 108 IPR000315 GO:0008270(InterPro)
Lcy2g0242 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515(InterPro)
Lcy2g0242 375 Pfam CCT motif 302 344 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0242 Lcy-Chr2:1914128 Lcy3g0399 Lcy-Chr3:13014973 2.57E-31 dispersed
Lcy13g1849 Lcy-Chr13:37431636 Lcy2g0242 Lcy-Chr2:1914128 2.73E-78 transposed
Lcy2g0242 Lcy-Chr2:1914128 Lcy4g1662 Lcy-Chr4:41924170 3.08E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19682 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0242 - - - 0.0