Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0254 ATGCAGCGGCAGACAAGGTATATGGAGAGGACAAACTCCATGAGGGAGAAAAGGGGCTTGGAGGGTGGAGAAGATGAGCTGCCAGAGCGAAAGCGACCAGCTCTAGCTAGTGTGATTGTAGAAGCCCTGAAGGTGGATAGTTTACAGAAGCTCTGTTCATCTTTGGAACCAATACTCCGTAGAGTGGTTAGTGAAGAAGTGGAACGTGCTTTGGCTAAGATAGGTCCTGCTAGAATTACTGGAAGGTCTTCTCCTAAAAGGATTGAAGGTCCTGATGGAAGAAACTTGCAACTGCACTTTAGGTCTAGATTGTCTCTTCCCCTATTCACTGGAGGGAAAGTGGAAGGTGAACAGGGTGCAGCAATCCATGTCGTTTTGGTTGATGCCAACACAGGCCATGTAGTAACGTCAGGACCTGAAGCCTTGACAAAATTGGACATTGTGGTACTTGAAGGTGATTTTAACAATGAAGATGATGAAGATTGGACGGAGGAAGAATTTGAAAGTCATGTAGTCAAAGAGCGTGAAGGAAAGAGGCCTCTATTGACTGGTGATCTGCAGGTTTCCCTCAAGGAAGGTATTGGAACACTGGGGGATTTGACCTTCACTGATAACTCAAGTTGGATTAGGAGCAGAAAGTTCAGACTTGGGTTAAAGGTGGCTTCAGGATTTTGTGAAGGTGTACGTATTCGTGAAGCAAAAACTGAAGCTTTTACAGTTAAAGATCATCGAGGAGAATTGTATAAAAAACATTACCCACCTGCATTAAACGATGAGGTGTGGAGATTGGAAAAAATAGGAAAGGATGGTTCATTTCACAAACGGCTAAACAAAAAGGGAATATTCTCCGTTGAAGACTTTCTTCGAATGGTAGTTCGCGATTCTCAAGGACTACGGAGTATCCTTGGAAGTGGTATGTCAAATAAGATGTGGGAAGCTCTTTTAGAGCATGCTAAAACCTGTGTCCTGAGCGGAAAGCTGTATATTTATTACCCAGAGGAAACAAGAAATGTTGGTGTTGTTTTTAACAATATCTACGAGCTCAATGGCCTGATTACAGGGGAACAATACTTTTCTGCTGATTCTCTGTCCGACAGCCAGAAGGTTTATGTAGATACACTAGTGAACAAAGCATATGAAAATTGGAATCAAGTTGTAGAGTACGACGGAAAATCACTTTTGAGCTCTAAGCAGCCTAAGAAGACCAATGCATCCCGAAATGACTTTCAAGGAGGTCATCTTGATCTTTCTAATACTCTAGATCATGGGTCACTGTCCCGCATGCCAGTTCCAGTTCAGCCTCAGCAACCTGTAGTGGATTCAGGGCTCTCGGCTGCAGGGTATAATGATAATACAGCCACAAGATATTCAACCCAGCCTCAGTTTATGAATTCAACTTCTCGACCCCAGTTTGATAATTCTACGTTTACTCCTAATGAGTTGATCGGCAATTCTAACCAAGTTCATATCACAAGAAATGACAATAGTGCTTTTGGTTTGGCTCTTGGTCCTCCACAAGCATCATCTTCAGGGTTTCAGGCGCTTGGTTCTTCTATTCAGGAATCTAATATGAATCCATTTGACTGGTCAAACAATAGAGACAAAGGAGTTGACGACTTCTTTTCAGAGGATGAGATTCGTATGAGAAGTCATGAAATGCTTGAAAATGAAGATATGCAACATTTGTTGCGAATGTTTAGCATGGGAGGGCATACCTCTGTCAACGTCCATGATGAGGGATTTTCCTTCCCATCATTTATGCCTTCACCAATGCCAAGTTTTGATGATCGCAACCGTTCTGGAAAAGCTGTGGTAGGTTGGTTGAAGATCAAAGCTGCAATGAGGTGGGGCTTCTTCATCAGGAAGAAAGCAGCCGAGAGACGTGCACAGATTGTCGAGTTGGATGAGGAATAG 1914 43.1 MQRQTRYMERTNSMREKRGLEGGEDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIGPARITGRSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTSGPEALTKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRPLLTGDLQVSLKEGIGTLGDLTFTDNSSWIRSRKFRLGLKVASGFCEGVRIREAKTEAFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKKGIFSVEDFLRMVVRDSQGLRSILGSGMSNKMWEALLEHAKTCVLSGKLYIYYPEETRNVGVVFNNIYELNGLITGEQYFSADSLSDSQKVYVDTLVNKAYENWNQVVEYDGKSLLSSKQPKKTNASRNDFQGGHLDLSNTLDHGSLSRMPVPVQPQQPVVDSGLSAAGYNDNTATRYSTQPQFMNSTSRPQFDNSTFTPNELIGNSNQVHITRNDNSAFGLALGPPQASSSGFQALGSSIQESNMNPFDWSNNRDKGVDDFFSEDEIRMRSHEMLENEDMQHLLRMFSMGGHTSVNVHDEGFSFPSFMPSPMPSFDDRNRSGKAVVGWLKIKAAMRWGFFIRKKAAERRAQIVELDEE 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2023896 2032256 + Maker00007486 Lcy2g0254 625019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0254 637 MobiDBLite consensus disorder prediction 9 28 - -
Lcy2g0254 637 MobiDBLite consensus disorder prediction 1 28 - -
Lcy2g0254 637 PANTHER OS02G0177800 PROTEIN 15 628 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Lcy2g0254 637 Pfam Calmodulin binding protein-like N-terminal domain 96 243 IPR046831 -
Lcy2g0254 637 Pfam Calmodulin binding protein central domain 255 321 IPR046830 -
Lcy2g0254 637 Pfam Calmodulin binding protein C-terminal domain 326 388 IPR046829 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0254 Lcy-Chr2:2023896 Lcy5g2411 Lcy-Chr5:46914079 2.32E-102 dispersed
Lcy2g0254 Lcy-Chr2:2023896 Lcy2g2242 Lcy-Chr2:46589266 1.40E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0254 - - - 0.0