Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0271 ATGGCGGCCGCCGATCCCTCACCGGAATTCATATTCCGGTCAAAGCTCCCGGACATCACCATCCCCAACCACCTCCCCTTGCACACATATTGCTTCGAAAAGATCTCCCAATTCAAACACCGTCCATGTCTAATCAACGGCGCCACCGGCGACACCTACACCTACGGCGAAGTCCACGCAACAGCCCGCCGAGTCGCCGCCGGCCTCCACAAGCTCGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACAGCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTATATCGGCGCCACCGCCACCATGGCTAACCCGTTCTTCACTCCGCCAGAGATCGCGAAACACGCCGCGTCCTCCGGCGCCAAGCTGATCATAACCCAAGCCGCCTTCGCCGAGAAAGTGAAGAACCTCTCCGACGAAAACGACGCGATCGTCGAAGTCATATACATCGACCCTCCGCCGGACGGAGGATCTCATTTTTCGTCGTTGACCGATCACGCAAAAGAGGAGGAAATGCCGGATGTGAAGATCAGTCCCAACGACGTCGTCGCGTTGCCTTACTCGTCTGGCACTACGGGTCTCCCGAAAGGAGTGATGCTGACTCACAAGGGATTGGTGACCAGCGTGGCGCAACAAGTGGACGGTGAAAATCCGCACCTCTATATTCGAAGCGACGACGTCGTTTTGTGCGTGCTTCCTCTGTTTCACATCTATTCGCTGAACTCGATCATGATGTGCTCGTTGCGAGTCGGAGCCGCGATTTTGATCGTACAGAAATTCGAAGTTAATTCGCTTGTGGAGTTGGTGCCGAAATATAAGGTGACGGTTGCGCCGTTTGTGCCGCCTATTGTATTGGCGATTGCGAAGAGCCCGGCTGTGGACCGTGCCGACATGTCGTCCATACGGATGGTGTTGTCGGGAGCGGCACCGCTCGGGAAGGAGCTTGAAGATGCGTTTAGAGCCAAGCTTCCGCATGCGATTCTCGGGCAGGGATATGGAATGACAGAGTCGGGGTCGGTGCTGACGATGTCCCTGGCGTTTGCAAAGGAGAGGTTCGAGATAAAATCAGGAGCTTGTGGGACAGTGATGAGAAATTCAAAGATGAAGATCATAAACCCTCAAACGGGAGTTTCTCTTCCAAGGAATCAACCTGGGGAGATTTGTATTAGAAGCCCTCAGATGATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATCGACGAAGACGGATGGCTTCACACCGGCGACATAGGTTTCGTCGACGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTGATTTCACACAGCCAGATCGCCGACGCTGCAGTTATCCCTTTGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGGTTCAACATCACCGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTTTATAAGAGGATTAATCGCGTCTTCTTCGTGGATTCCATCCCTAAAAGTCCTTCTGGCAAAATCTTGCGGAAACAACTTCGAAATTTGCTCGCAGCCAGTATTCCCAACTAG 1638 53.36 MAAADPSPEFIFRSKLPDITIPNHLPLHTYCFEKISQFKHRPCLINGATGDTYTYGEVHATARRVAAGLHKLGIGKGDVIMLLLQNSPQFVLAFLGASYIGATATMANPFFTPPEIAKHAASSGAKLIITQAAFAEKVKNLSDENDAIVEVIYIDPPPDGGSHFSSLTDHAKEEEMPDVKISPNDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFEVNSLVELVPKYKVTVAPFVPPIVLAIAKSPAVDRADMSSIRMVLSGAAPLGKELEDAFRAKLPHAILGQGYGMTESGSVLTMSLAFAKERFEIKSGACGTVMRNSKMKIINPQTGVSLPRNQPGEICIRSPQMMKGYLNDEEATKGIIDEDGWLHTGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHSQIADAAVIPLKDEVAGEVPVAFIVRSDGFNITEDEIKQYISKQVVFYKRINRVFFVDSIPKSPSGKILRKQLRNLLAASIPN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2171317 2175966 + Maker00009160 Lcy2g0271 625036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0271 545 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Lcy2g0271 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 536 - GO:0016405(PANTHER)
Lcy2g0271 545 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Lcy2g0271 545 CDD 4CL 21 535 - -
Lcy2g0271 545 Gene3D - 4 439 IPR042099 -
Lcy2g0271 545 Gene3D - 440 542 IPR045851 -
Lcy2g0271 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 440 - -
Lcy2g0271 545 SUPERFAMILY Acetyl-CoA synthetase-like 11 541 - -
Lcy2g0271 545 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Lcy2g0271 545 Pfam AMP-binding enzyme 33 403 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1663 Lcy-Chr12:37040879 Lcy2g0271 Lcy-Chr2:2171317 1.41E-52 dispersed
Lcy2g0271 Lcy-Chr2:2171317 Lcy3g1967 Lcy-Chr3:46817260 4.26E-254 dispersed
Lcy2g0271 Lcy-Chr2:2171317 Lcy2g0274 Lcy-Chr2:2196598 4.27E-205 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0271 K01904 - csv:101218077 877.856