Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0276 ATGGCAGCCCTCCAAATCCATGGCACCGAAACCGAAATCTCCACTGAGTTTCTTATAGCTCGAATCATCGACCTCCATGAAAGCATCTTGAAGCTCGAAACCCTAAGGCCTTGCAAGAAAGTGAACACCCTCTTCACCAACCTCGTCAACTTATGCATCTTACCCTCTTCCATAGACGTTTCCACATTGCCACCCCATTTACAAGCCATTCGCGAGTGCCTCATGGTTCTCTGCGGCCGAGCCGAGGGCCTACTCGAGTTCGAATTCTCGACCTTGCTCGGAAAAATCCCCAAACCTCTCAACAATCTCACTCTATTTCCATATTACCAGAACTACATCAAATTAGCCCACCTTGAACACAAGATTTTGAATGACAATGGAGTTGTGAATCCAAAAAAGGTAGCTTTTGTGGGATCGGGTCCTTTGCCTCTAACTTCCATTATCATGGCCATGCAGCACATGAAGACCACGTATTTCGATAATTACGACATTGACAGCATGGCAAATGACGTGGCGGGAAAGATCGTGGCGTCGGATGCTGAGCTGGAGGGAAGAATGAAGTTTTGGACAAGAGATATTGTTGAGGTAAAGGAAGAGCTTGGGGGATATGATTGTGTGTTTTTGGCAGCTCTTGTAGGGATGAAGAAGGAAGAAAAAGTGAAGATTTTAGGGCACTTGAGAAAGTATATGAAAGAAGGTGGGATTTTGGTTGTGAGAAGTGCTAAAGGAGGTAGAGCATTTTTGTACCCTGTGGTTGAGCTTCATGATCTGATCGGCTTTGAAGTTCTCTCTATTTTTCATCCCACTGATGATGTTGTCAACTCGGTTCTCTTAGCTCGCAAGCCTATAATTATATGA 858 44.87 MAALQIHGTETEISTEFLIARIIDLHESILKLETLRPCKKVNTLFTNLVNLCILPSSIDVSTLPPHLQAIRECLMVLCGRAEGLLEFEFSTLLGKIPKPLNNLTLFPYYQNYIKLAHLEHKILNDNGVVNPKKVAFVGSGPLPLTSIIMAMQHMKTTYFDNYDIDSMANDVAGKIVASDAELEGRMKFWTRDIVEVKEELGGYDCVFLAALVGMKKEEKVKILGHLRKYMKEGGILVVRSAKGGRAFLYPVVELHDLIGFEVLSIFHPTDDVVNSVLLARKPIII 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2214332 2215189 + Maker00007439 Lcy2g0276 625041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0276 285 PANTHER NICOTIANAMINE SYNTHASE 3 12 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy2g0276 285 Gene3D Vaccinia Virus protein VP39 18 282 IPR029063 -
Lcy2g0276 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 273 IPR029063 -
Lcy2g0276 285 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy2g0276 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 285 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0276 K05953 - - csv:101209464 482.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0276 Lcy-Chr2:2214332 Lcy2g2337 Lcy-Chr2:49174825 1.33E-97 dispersed
Lcy2g0276 Lcy-Chr2:2214332 Lcy2g0281 Lcy-Chr2:2252853 3.08E-79 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy2g2337 . 1 307 Nicotianamine Synthase Gene Family AT1G09240 55.8 6.0e-94 341.7
Lcy4g1787 . 128 395 Nicotianamine Synthase Gene Family AT1G09240 59.5 2.8e-91 332.8
Lcy4g1788 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 61.4 8.1e-91 331.3
Lcy2g0276 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 54.4 2.6e-73 273.1
Lcy13g1200 . 61 304 Nicotianamine Synthase Gene Family AT1G09240 51.8 1.6e-70 263.8
Lcy2g2337 . 3 273 Nicotianamine Synthase Gene Family AT1G56430 61.9 3.4e-97 352.4
Lcy4g1787 . 120 451 Nicotianamine Synthase Gene Family AT1G56430 51.8 1.4e-95 347.1
Lcy4g1788 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 60.7 1.4e-90 330.5
Lcy2g0276 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 54.5 2.0e-76 283.5
Lcy13g1200 . 61 305 Nicotianamine Synthase Gene Family AT1G56430 51.6 1.0e-72 271.2
Lcy2g2337 . 1 288 Nicotianamine Synthase Gene Family AT5G04950 54.6 4.7e-91 332.0
Lcy4g1788 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 58.9 3.1e-90 329.3
Lcy4g1787 . 128 396 Nicotianamine Synthase Gene Family AT5G04950 58.3 7.6e-89 324.7
Lcy2g0276 . 18 281 Nicotianamine Synthase Gene Family AT5G04950 50.7 3.2e-71 266.2
Lcy2g2337 . 1 273 Nicotianamine Synthase Gene Family AT5G56080 57.8 2.8e-91 332.8
Lcy4g1787 . 128 396 Nicotianamine Synthase Gene Family AT5G56080 57.8 8.9e-90 327.8
Lcy4g1788 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 58.4 5.8e-89 325.1
Lcy2g0276 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 51.1 2.1e-70 263.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125