Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0276 ATGGCAGCCCTCCAAATCCATGGCACCGAAACCGAAATCTCCACTGAGTTTCTTATAGCTCGAATCATCGACCTCCATGAAAGCATCTTGAAGCTCGAAACCCTAAGGCCTTGCAAGAAAGTGAACACCCTCTTCACCAACCTCGTCAACTTATGCATCTTACCCTCTTCCATAGACGTTTCCACATTGCCACCCCATTTACAAGCCATTCGCGAGTGCCTCATGGTTCTCTGCGGCCGAGCCGAGGGCCTACTCGAGTTCGAATTCTCGACCTTGCTCGGAAAAATCCCCAAACCTCTCAACAATCTCACTCTATTTCCATATTACCAGAACTACATCAAATTAGCCCACCTTGAACACAAGATTTTGAATGACAATGGAGTTGTGAATCCAAAAAAGGTAGCTTTTGTGGGATCGGGTCCTTTGCCTCTAACTTCCATTATCATGGCCATGCAGCACATGAAGACCACGTATTTCGATAATTACGACATTGACAGCATGGCAAATGACGTGGCGGGAAAGATCGTGGCGTCGGATGCTGAGCTGGAGGGAAGAATGAAGTTTTGGACAAGAGATATTGTTGAGGTAAAGGAAGAGCTTGGGGGATATGATTGTGTGTTTTTGGCAGCTCTTGTAGGGATGAAGAAGGAAGAAAAAGTGAAGATTTTAGGGCACTTGAGAAAGTATATGAAAGAAGGTGGGATTTTGGTTGTGAGAAGTGCTAAAGGAGGTAGAGCATTTTTGTACCCTGTGGTTGAGCTTCATGATCTGATCGGCTTTGAAGTTCTCTCTATTTTTCATCCCACTGATGATGTTGTCAACTCGGTTCTCTTAGCTCGCAAGCCTATAATTATATGA 858 44.87 MAALQIHGTETEISTEFLIARIIDLHESILKLETLRPCKKVNTLFTNLVNLCILPSSIDVSTLPPHLQAIRECLMVLCGRAEGLLEFEFSTLLGKIPKPLNNLTLFPYYQNYIKLAHLEHKILNDNGVVNPKKVAFVGSGPLPLTSIIMAMQHMKTTYFDNYDIDSMANDVAGKIVASDAELEGRMKFWTRDIVEVKEELGGYDCVFLAALVGMKKEEKVKILGHLRKYMKEGGILVVRSAKGGRAFLYPVVELHDLIGFEVLSIFHPTDDVVNSVLLARKPIII 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2214332 2215189 + Maker00007439 Lcy2g0276 625041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0276 285 PANTHER NICOTIANAMINE SYNTHASE 3 12 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy2g0276 285 Gene3D Vaccinia Virus protein VP39 18 282 IPR029063 -
Lcy2g0276 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 273 IPR029063 -
Lcy2g0276 285 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Lcy2g0276 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 285 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0276 Lcy-Chr2:2214332 Lcy2g2337 Lcy-Chr2:49174825 1.33E-97 dispersed
Lcy2g0276 Lcy-Chr2:2214332 Lcy2g0281 Lcy-Chr2:2252853 3.08E-79 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0276 K05953 - csv:101209464 482.256