Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0293 ATGAACTCTTCTTCTTCTTCTTCCTCTTCCTCTTCTTCAGCCTCTCAAAATTGGCTTGCTTTTTCTCTCTCCAACAATCCCAACTCTCTCTCTCTCTTCCATCATCCTACCGATATCTCTATCTTCTCCGCCCCCGCCCCCAAGCTCGAGGACTTTCTCCGGGCTGCTTCCGCTCCCCCTCCGCAGCCTCCCTTTCAGTTCTCAGCCCATCACACTCCGCCGCCTAGCTTCTGTGATCAATCTGATCAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGAGCTCCCACCCAGTTGCCGGACCAACAGATTCAGCATCTCCACGCGCCGCCGCCGCCGGCACCTCAGCCGGACACCCCTGCCCCGCCGCCTAAGAAGGCCGTCGATACTTTTGGCCAACGCACCTCCATCTACCGTGGCGTCACAAGACATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGAAAAGGAAGACAAGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTTGCCGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGACTATGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAGGAATTTGTTGCTTCATTAAGAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACATTCAGCACTCAGGAAGAAGCAGCTGAGGCCTATGATATCGCAGCCATCAAATTCAGAGGCCTCAACGCCGTCACCAACTTCGACATCAGTCGCTACGACGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCAGGCACCAAATCAAAAACCACCTCCGACTCCGCCACCTCCGATGGAGGTAGTCGATCGACCGAAGAACGCGACGTCCACCATTCTCCCGCGTCCTCCACCGCAACTCTCATTTCGTCTCAACCCAACAACTCCACCCTAAGCTTTGCAATGCCAATCAAACAAGACCCATCCGATCAATACTGGTCCATGCTCGGCTACAACCCCGGCGCCTTCAACACAAACCTCCCCAAACCCGAAAACATCCCACCGTCATCGTCGTCGTCAATGACAGTATTCCAACAATCTTCAAACACCGGATCCACAATGTTCCCCGCCATCGCGGACCTACCTTCGAGCGGCTCACCGCTCACCGAAGGTGCGGTATACAGCGGAATGTACGTCCAGCAACAACAATATGCAACACCAATTGCATTGAGCAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGATTCGAAGCTCATGCAAAACCAAGCCTTTTTCAGACGCCAATATTTGGAATAGAATGA 1419 51.94 MNSSSSSSSSSSSASQNWLAFSLSNNPNSLSLFHHPTDISIFSAPAPKLEDFLRAASAPPPQPPFQFSAHHTPPPSFCDQSDQICDSDLKTIAASFLRGAPTQLPDQQIQHLHAPPPPAPQPDTPAPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKELEDMKNMTRQEFVASLRRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSGTKSKTTSDSATSDGGSRSTEERDVHHSPASSTATLISSQPNNSTLSFAMPIKQDPSDQYWSMLGYNPGAFNTNLPKPENIPPSSSSSMTVFQQSSNTGSTMFPAIADLPSSGSPLTEGAVYSGMYVQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGIE 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2320646 2323484 + Maker00021842 Lcy2g0293 625058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0293 472 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0293 472 PRINTS Ethylene responsive element binding protein signature 264 284 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0293 472 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 342 - -
Lcy2g0293 472 ProSiteProfiles AP2/ERF domain profile. 221 282 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0293 472 MobiDBLite consensus disorder prediction 111 129 - -
Lcy2g0293 472 Gene3D AP2/ERF domain 227 284 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0293 472 Gene3D AP2/ERF domain 142 207 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0293 472 SUPERFAMILY DNA-binding domain 230 284 IPR016177 GO:0003677(InterPro)
Lcy2g0293 472 MobiDBLite consensus disorder prediction 297 341 - -
Lcy2g0293 472 SMART rav1_2 229 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0293 472 SMART rav1_2 142 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0293 472 SUPERFAMILY DNA-binding domain 141 207 IPR016177 GO:0003677(InterPro)
Lcy2g0293 472 CDD AP2 229 284 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0293 472 FunFam AP2-like ethylene-responsive transcription factor ANT 141 207 - -
Lcy2g0293 472 MobiDBLite consensus disorder prediction 297 317 - -
Lcy2g0293 472 Pfam AP2 domain 143 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0293 472 MobiDBLite consensus disorder prediction 55 78 - -
Lcy2g0293 472 MobiDBLite consensus disorder prediction 109 134 - -
Lcy2g0293 472 ProSiteProfiles AP2/ERF domain profile. 142 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy2g0293 472 CDD AP2 141 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0293 Lcy-Chr2:2320646 Lcy6g1105 Lcy-Chr6:12454166 2.31E-96 dispersed
Lcy2g0293 Lcy-Chr2:2320646 Lcy4g1350 Lcy-Chr4:32415061 2.73E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19687 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0293 K09285 - csv:101210453 565.844