Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0293 | ATGAACTCTTCTTCTTCTTCTTCCTCTTCCTCTTCTTCAGCCTCTCAAAATTGGCTTGCTTTTTCTCTCTCCAACAATCCCAACTCTCTCTCTCTCTTCCATCATCCTACCGATATCTCTATCTTCTCCGCCCCCGCCCCCAAGCTCGAGGACTTTCTCCGGGCTGCTTCCGCTCCCCCTCCGCAGCCTCCCTTTCAGTTCTCAGCCCATCACACTCCGCCGCCTAGCTTCTGTGATCAATCTGATCAGATTTGCGATTCTGATCTCAAAACCATAGCCGCTAGTTTCCTCCGTGGAGCTCCCACCCAGTTGCCGGACCAACAGATTCAGCATCTCCACGCGCCGCCGCCGCCGGCACCTCAGCCGGACACCCCTGCCCCGCCGCCTAAGAAGGCCGTCGATACTTTTGGCCAACGCACCTCCATCTACCGTGGCGTCACAAGACATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGAAAAGGAAGACAAGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTTGCCGCTCTCAAATACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGGACTATGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAGGAATTTGTTGCTTCATTAAGAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTACCTTGGAACATTCAGCACTCAGGAAGAAGCAGCTGAGGCCTATGATATCGCAGCCATCAAATTCAGAGGCCTCAACGCCGTCACCAACTTCGACATCAGTCGCTACGACGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCAGGCACCAAATCAAAAACCACCTCCGACTCCGCCACCTCCGATGGAGGTAGTCGATCGACCGAAGAACGCGACGTCCACCATTCTCCCGCGTCCTCCACCGCAACTCTCATTTCGTCTCAACCCAACAACTCCACCCTAAGCTTTGCAATGCCAATCAAACAAGACCCATCCGATCAATACTGGTCCATGCTCGGCTACAACCCCGGCGCCTTCAACACAAACCTCCCCAAACCCGAAAACATCCCACCGTCATCGTCGTCGTCAATGACAGTATTCCAACAATCTTCAAACACCGGATCCACAATGTTCCCCGCCATCGCGGACCTACCTTCGAGCGGCTCACCGCTCACCGAAGGTGCGGTATACAGCGGAATGTACGTCCAGCAACAACAATATGCAACACCAATTGCATTGAGCAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGATTCGAAGCTCATGCAAAACCAAGCCTTTTTCAGACGCCAATATTTGGAATAGAATGA | 1419 | 51.94 | MNSSSSSSSSSSSASQNWLAFSLSNNPNSLSLFHHPTDISIFSAPAPKLEDFLRAASAPPPQPPFQFSAHHTPPPSFCDQSDQICDSDLKTIAASFLRGAPTQLPDQQIQHLHAPPPPAPQPDTPAPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKELEDMKNMTRQEFVASLRRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSGTKSKTTSDSATSDGGSRSTEERDVHHSPASSTATLISSQPNNSTLSFAMPIKQDPSDQYWSMLGYNPGAFNTNLPKPENIPPSSSSSMTVFQQSSNTGSTMFPAIADLPSSGSPLTEGAVYSGMYVQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGIE | 472 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2320646 | 2323484 | + | Maker00021842 | Lcy2g0293 | 625058 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0293 | 472 | PRINTS | Ethylene responsive element binding protein signature | 143 | 154 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0293 | 472 | PRINTS | Ethylene responsive element binding protein signature | 264 | 284 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0293 | 472 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 16 | 342 | - | - | |
Lcy2g0293 | 472 | ProSiteProfiles | AP2/ERF domain profile. | 221 | 282 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0293 | 472 | MobiDBLite | consensus disorder prediction | 111 | 129 | - | - | |
Lcy2g0293 | 472 | Gene3D | AP2/ERF domain | 227 | 284 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0293 | 472 | Gene3D | AP2/ERF domain | 142 | 207 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0293 | 472 | SUPERFAMILY | DNA-binding domain | 230 | 284 | IPR016177 | GO:0003677(InterPro) | |
Lcy2g0293 | 472 | MobiDBLite | consensus disorder prediction | 297 | 341 | - | - | |
Lcy2g0293 | 472 | SMART | rav1_2 | 229 | 288 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0293 | 472 | SMART | rav1_2 | 142 | 211 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0293 | 472 | SUPERFAMILY | DNA-binding domain | 141 | 207 | IPR016177 | GO:0003677(InterPro) | |
Lcy2g0293 | 472 | CDD | AP2 | 229 | 284 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0293 | 472 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 141 | 207 | - | - | |
Lcy2g0293 | 472 | MobiDBLite | consensus disorder prediction | 297 | 317 | - | - | |
Lcy2g0293 | 472 | Pfam | AP2 domain | 143 | 197 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0293 | 472 | MobiDBLite | consensus disorder prediction | 55 | 78 | - | - | |
Lcy2g0293 | 472 | MobiDBLite | consensus disorder prediction | 109 | 134 | - | - | |
Lcy2g0293 | 472 | ProSiteProfiles | AP2/ERF domain profile. | 142 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy2g0293 | 472 | CDD | AP2 | 141 | 207 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0293 | Lcy-Chr2:2320646 | Lcy6g1105 | Lcy-Chr6:12454166 | 2.31E-96 | dispersed | |
Lcy2g0293 | Lcy-Chr2:2320646 | Lcy4g1350 | Lcy-Chr4:32415061 | 2.73E-102 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19687 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy2g0293 | K09285 | - | csv:101210453 | 565.844 |