Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0298 ATGGCCGGAAAACTCAGTCTCGAGGAGATCAAGAACGAAACCGTTGATCTGGAGAAAATACCCATTGCGGAAGTGTTTGAGCAATTGAAATGTGGCCCCGAAGGTCTGTCAACTCAGGAGGGAGAGAACAGACTCCAGTTATTCGGTCCCAACAAATTAGAAGAGAAAAAGGAAAGCAAAATACTCAAGTTCTTGGGGTTCATGTGGAATCCCTTGTCATGGGTTATGGAAGCTGCAGCTATTATGGCAATTGCTTTGGCAAATGGTGGTGGAAAGCCTCCAGATTGGGAAGACTTTGTGGGAATTATATGTTTATTGGTGATCAACTCCACAATCAGTTTCATTGAGGAAAACAATGCTGGTAATGCTGCTGCTGCTCTCATGGCTGGCCTTGCCCCAAAAACTAAGATCTTAACGCTTTGCAACTGCAAAGAGGATGTCAAGAAGAAGGCTCATGCTGTTATTGACAAATTTGCCGAACGCGGTCTTCGCTCATTGGCTGTCGCGAGACAGGAAGTACCTGAGAAAAGAAAAGACAGTCCTGGAAGTCCATGGCAGTTCGTTGGTTTATTGCCTCTATTTGATCCTCCAAGGCATGACAGTGGAGAAACCATCAAAAGAGCTCTCAATCTAGGTGTGAATGTCAAGATGATTACTGGTGATCAGCTTGCTATCGCCAAAGAGACCGGTCGAAGACTTGGAATGGGGACTAACATGTACCCATCTGCATCATTACTTGGTCAACACAAGGATGAAAGCATTGCAGGCCTTCCTGTTGAAGAGTTAATTGAAAAGGCAGATGGGTTTGCTGGAGTTTTTCCAGAGCACAAGTATGAGATCGTGAGGAAGTTGCAGGAGAGGAAACATATTTGTGGAATGACTGGAGATGGTGTGAACGATGCTCCTGCATTGAAGAAGGCCGACATCGGAATTGCAGTTGCCGACGCTACTGATGCTGCAAGAAGTGCTTCTGATATTGTTCTCACAGAGCCAGGCTTAAGTGTTATCATTAGTGCTGTGCTTACAAGTAGAGCTATCTTCCAAAGAATGAAGAATTACACAATTTATGCAGTTTCAATCACAATACGTATAGTGTTCGGTTTCATGCTGATTGCCCTCATATGGAAGTTCGATTTCTCTCCATTCATGGTTTTGATCATTGCCATTCTAAACGATGGTACAATCATGACCATCTCAAAGGATAGAGTGAAGCCATCTCCATTACCCGACAGCTGGAAATTGAAAGAGATATTTGCTACAGGCATTATGCTTGGAGGTTACTTGGCATTGATGACTGTCATATTCTTCTGGATAATGAAAGAGACAGAATTCTTCCCAGAGAAATTTGGTGTAAGATCTATTAAGGACAGTCCTAAAGAAATGATGGCTGCTCTATACCTACAAGTGAGTATTGTCAGCCAGGCTTTGATATTTGTGACTCGATCTCGCAGCTGGTCCTACTTCGAACGTCCTGGCTTGCTACTGATGGGTGCTTTCATGATTGCACAACTGGTTGCAACACTCATAGCAGTATATGCAAACTGGGGATTTGCAAGGATAAAAGGAGTTGGATGGGGATGGGCTGGTGTGGTCTGGATCTACAGCATTATTTTCTACATTCCATTAGACTTTATCAAGTTTGCAATCCGCTATATCTTAAGTGGCAAGGCTTGGCTTAACTTGCTAGACAACAAGACCGCCTTTACGACGAAGAAAGACTACGGAAGGGAGGAAAGGGAAGCTCAATGGGCTGCCACTCAAAGGACCTTACATGGCCTCCAACCAGCCCCAGAAAGAACCAGTCTCTTCCTTGAAAAGAATAGCTACAGAGAGCTTTCTGAAATCGCTGAGCAGGCCAAGAGACGAGCAGAGATTGCTAGGCTTAGAGAGCTCAATACTCTCAAGGGTCATGTTGAATCAGTAGTGAAACTGAAAGGGCTGGATATTGATACAATCCAACAGCATTATACAGTGTAA 1977 44.06 MAGKLSLEEIKNETVDLEKIPIAEVFEQLKCGPEGLSTQEGENRLQLFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWEDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKILTLCNCKEDVKKKAHAVIDKFAERGLRSLAVARQEVPEKRKDSPGSPWQFVGLLPLFDPPRHDSGETIKRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVRKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIMLGGYLALMTVIFFWIMKETEFFPEKFGVRSIKDSPKEMMAALYLQVSIVSQALIFVTRSRSWSYFERPGLLLMGAFMIAQLVATLIAVYANWGFARIKGVGWGWAGVVWIYSIIFYIPLDFIKFAIRYILSGKAWLNLLDNKTAFTTKKDYGREEREAQWAATQRTLHGLQPAPERTSLFLEKNSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2384611 2390826 + Maker00022691 Lcy2g0298 625063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0298 658 Coils Coil 609 629 - -
Lcy2g0298 658 PANTHER CALCIUM-TRANSPORTING ATPASE 136 581 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Lcy2g0298 658 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 137 200 IPR023299 GO:0000166(InterPro)
Lcy2g0298 658 Gene3D - 607 658 - -
Lcy2g0298 658 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Lcy2g0298 658 FunFam ATPase 4 plasma membrane-type 279 521 - -
Lcy2g0298 658 PRINTS P-type cation-transporting ATPase superfamily signature 294 313 - -
Lcy2g0298 658 PRINTS P-type cation-transporting ATPase superfamily signature 317 329 - -
Lcy2g0298 658 PRINTS P-type cation-transporting ATPase superfamily signature 211 221 - -
Lcy2g0298 658 PRINTS P-type cation-transporting ATPase superfamily signature 189 200 - -
Lcy2g0298 658 Gene3D - 186 257 IPR023214 -
Lcy2g0298 658 FunFam Membrane H(+)-ATPase1 134 194 - -
Lcy2g0298 658 Pfam haloacid dehalogenase-like hydrolase 164 308 - -
Lcy2g0298 658 PRINTS H+-transporting ATPase (proton pump) signature 325 350 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0298 658 PRINTS H+-transporting ATPase (proton pump) signature 294 310 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0298 658 PRINTS H+-transporting ATPase (proton pump) signature 151 169 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0298 658 PRINTS H+-transporting ATPase (proton pump) signature 466 487 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0298 658 PRINTS H+-transporting ATPase (proton pump) signature 266 282 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0298 658 SUPERFAMILY HAD-like 186 340 IPR036412 -
Lcy2g0298 658 NCBIfam HAD-IC family P-type ATPase 269 382 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0298 658 Gene3D - 295 552 - -
Lcy2g0298 658 Gene3D - 67 143 - -
Lcy2g0298 658 FunFam Plasma membrane ATPase 187 342 - -
Lcy2g0298 658 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Lcy2g0298 658 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 553 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1342 Lcy-Chr13:31378114 Lcy2g0298 Lcy-Chr2:2384611 0 dispersed
Lcy2g0298 Lcy-Chr2:2384611 Lcy9g1775 Lcy-Chr9:42936955 0 dispersed
Lcy2g0298 Lcy-Chr2:2384611 Lcy2g0304 Lcy-Chr2:2456692 2.54E-06 proximal
Lcy12g0539 Lcy-Chr12:6595148 Lcy2g0298 Lcy-Chr2:2384611 0 transposed
Lcy2g0155 Lcy-Chr2:1218747 Lcy2g0298 Lcy-Chr2:2384611 0 transposed
Lcy4g1636 Lcy-Chr4:41309480 Lcy2g0298 Lcy-Chr2:2384611 1.57E-134 transposed
Lcy2g0298 Lcy-Chr2:2384611 Lcy4g1635 Lcy-Chr4:41307002 1.35E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0298 K01535 - csv:101221783 983.015