Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0304 ATGGCGGCCGGAGAAGAGAAGGCGGCGGCGGTGGCCGGAAAGAGTGGCGGCGGTGGGTTGCAGAGAAGTTACTTTGATGTGTTGGGGATTTGTTGTGCTTCGGAAATTCCTTTGATTGAGAATATATTGAAGGAGATGGAAGGAGTTAAAGAGATTAGAGTGATTGTTGCCACAAGAACTGTCATTGTTGTTCATGATAATCTCCTTGTTTCTCAAGCTCAAATTGTTAAAGCCCTAAACCAAGCAAGGTTGGAAGCGAACGTCAGAGCGTACGGAGATCAGAAAAATCACCGGAAAAGATGGCCGAGCCCGTATGCGGTGGCGAGTGGACTGCTGCTGCTTCTGTCGTTTCTCAAATATGTGAACCCTATTTTCCGATGGGTGGCTTTGGCCGCCGTCGCTGCCGGAATCTGGCCGATAGTCCTCAAAAGCTTCGCCGCCGTCCGTAATCTCAGAATCGACATCAATATTCTTGCTTTAATTGCGGTGATCGGGACAATCGTGATGAAGGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACAATCGCCGAGTGGCTCGAGTCCAGAGCCAGCCACAAGGCCAACGCCGTCATGTCGTCCCTTCTAAGCATCGCCCCTCAGAAAGCGGTTCTAGCCGACACCGGCGAAGTTGTCGGCGCCGACGAGGTGAAATTGGGGACTCTGCTGGCCGTCAAGGCCGGTGAAGACATTCCCATTGATGGAATCGTTGTCGAAGGAAAATGTGAAGTGGATGAGAAGACGCTTACTGGTGAATCTTTCCCTGTTCCCAAACAAAAGAATTCCACTGTTTGGGCTGGTACCATTAATCTAAATGGCTATGTTACTGTGAAGACTACTGCTCTTGCTGAGGACTGTGTGGTGGCTAAAATGGCTAAGCTGGTTGAAGAGGCCCAGAACAATAAATCTAGAACTCAAAGGTTCATTGACAAATGTGCCAAATTCTACACTCCAGCTGTTATAATCATATCAACTTGCATAGCGGTGATTCCAGTTGCTTTGAGACTACCCAATCGCAGACATTGGTTTCACTTGGCCCTGGTTGTGTTAGTAAGCGCGTGTCCCTGTGCCCTCATCCTTTCCACACCTGTTGCCTCTTTCTGTGCACTTACTAAGGCAGCAACTTCTGGCCTTCTAATCAAAGGAGGCGACTTCCTTGAAACTCTGGCCAAAATAAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGGGGTGAATTTATGGTGACTGAATTTCAAGCTCTTGATAAGGACAATATAAGCTTTGACACATTGCTCTACTGGGTATCAAGCATTGAGAGCAAGTCCAGTCATCCCATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCATCGATCCCAAACCCGAAAATGTGGATGACTTCCAAAATTTCCCTGGAGAAGGTGTTCATGGGAGAATTGATGGGAAAGACATCTATATTGGAAATCGAAAAATTGCTACAAGAGCCAATTGCACAACAGTCCCAGATATCAATGATGAAGCGAAGGATGGAAGGACTGTCGGATACATATTCTGTGGAACTACTGCAGTTGGAACCTTTAGTCTATCAGATTCTTGCAGAACAGGAGCTAAGGAGGCCATGGATGAGCTCCGATCTCTCGGTATAAAAACAGCCATGCTTACCGGAGACAGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTAGAAATAGTCCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTCAAAAGGGAGGGGCCAACGGCCATGATTGGAGACGGTTTAAATGATGCCCCTGCCTTGGCCACAGCTGATATTGGCATATCAATGGGGATCTCAGGTTCGGCCCTCGCAATAGAAACTGGAGATGTAATTCTAATGACTAATGACATCAGGAAAATTCCAAAAGCCATTAAACTTGCAAGAAGAGCTAATCGTAAAGTAATTGAAAATGTGATTCTATCAGTCGTTCCTAGAACTGCTATACTTGGTCTAGCATTTGGAGGTCATCCACTTGTTTGGGCAGCAGTTCTTGTTGACGTTGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTACTGCGAGGAACCGACGGACACAAAGGGAAAAAAGCTGGTAAGTTTTCTGCTACTCACTGTTCCTCCAAACATAAATGTTGTCATGTTGGTAGCCATTCAGATGAACATGGTAGTCACACTCATGATCATGGGTGCAACAATGGTAGTTCCCACTCTTCTAATCATCATCACCATGATCACGGGTGCAACAATGACAGTTCCCTCGCTTCTGGTCACCATCACCATCATCATGAGCACGAGGACTGTGGCTCTCTCAAGAAAACCCATGATGGCTGCTTACCTCAGAATTGTTCGTCCAAGTGTGATTCTGGGATGAAAAATTCGAGTTCATGCAAGAAAAGTAAACTTGTGGACTCAAGTTCTAAGGTAGATGATTCTGCGGGCAATGTAAAACCTTGTGAACATGGACATTGCGTCCACAACAACCAGCCTGATGAACATGACCATGATGCCCATTTATCGTGCGCTGACCATCATGTTGAGGATAAACATTGCTCTCCGAAGAATACACAAGAGTCTTGCTCTTCTCAGAAGTGTGCATCAAATTCATGTGAGAAAATCAAGTGCATAAGCTCACTCGCAAGCCTTGATGGATCTCTAGACAGTGTTGAGTTCCATGAAAGTGAATGTTGTACTCATAATAGCCAATCTGCTCAACACGATCATGAACATGACCATCATGCCCATTTTTCATGCGCTGATCATCATGTTGAGGAAAAACATTGTGCTCCAAAGAATACACAAGAGTGTTGCTCATCTCAGAAGTGTGCATCAAGTTCATGTGAGCAAATCAGTGTTGAGCTCCATGAAAGCGGATGTTGTACTCATAATAGCCAATCTGCTCAACATGATCATGACATCCATACTCCTAAATGTGATTTGGACGACAGCCACTTATCCAGCCCTGATCATCATACTGGTCATGGTTGTTGCTCTGAAAAGAACGCTCAGAAGGTTTCTTTATCTCCTCAAACGTGTCATTCTGAAACCTGCAATTTGAGTCCATGTGGGGAAACCAAATGTGTGGACTCAACTGCAAGGCAACATGCGCCTGAAGGCAGTCTAGAACTCCTCCAAGACCATAAGCATTGCCACCAAGGAAGCTTCGACACTTCCAATTTTGTCTTGAAATCCCAGGAAAAGCACAGGAAGAATTGCACTGGACCTTGCAAATCAAGATCAATAAGTGTGAGCTCAGAAGATGAATGCAGGAAAAGGCTTGAAATGATAGATGATTGTGCTGAAGCCAAGGGGCACCACAAGATGAAACAACATCACTGCGACACTCATTTGAGTCTTCGAAACGAAGGGACTCATCCTCATTGTAAGACATCAAATGGAGATGAAGGTGGAGCAATCAACACTGCCATTAGCATCAAGCTCGAATCAGACCATTCAAACCCAAAACCTGCCAGTGCCTGTAAGGCTCTGGAAAACAGAGAATCAAACAACAGCTGTAAAAGCTGCAAAAGGGGAAGCTCACAACTCAAAATTGGCAAATCTTGTGCAGCTTTGGAAAAGAGAGAATATGGTGGATGCTGTAAGAGTTACATGAAGGAGTGCTGCAGGAAACACGGTGATATCAGAACGGCAGTCCGAGGAGGCTTAAACGAAATAGTTATAGAATAG 3753 45.38 MAAGEEKAAAVAGKSGGGGLQRSYFDVLGICCASEIPLIENILKEMEGVKEIRVIVATRTVIVVHDNLLVSQAQIVKALNQARLEANVRAYGDQKNHRKRWPSPYAVASGLLLLLSFLKYVNPIFRWVALAAVAAGIWPIVLKSFAAVRNLRIDINILALIAVIGTIVMKDYLEAATIVFLFTIAEWLESRASHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVPKQKNSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDKCAKFYTPAVIIISTCIAVIPVALRLPNRRHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDFLETLAKIKIMAFDKTGTITRGEFMVTEFQALDKDNISFDTLLYWVSSIESKSSHPMAAALVDHGRSLSIDPKPENVDDFQNFPGEGVHGRIDGKDIYIGNRKIATRANCTTVPDINDEAKDGRTVGYIFCGTTAVGTFSLSDSCRTGAKEAMDELRSLGIKTAMLTGDSSAAALQAQKELGKALEIVHAELLPEDKTRLINDFKREGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKIPKAIKLARRANRKVIENVILSVVPRTAILGLAFGGHPLVWAAVLVDVGACVLVILNSMLLLRGTDGHKGKKAGKFSATHCSSKHKCCHVGSHSDEHGSHTHDHGCNNGSSHSSNHHHHDHGCNNDSSLASGHHHHHHEHEDCGSLKKTHDGCLPQNCSSKCDSGMKNSSSCKKSKLVDSSSKVDDSAGNVKPCEHGHCVHNNQPDEHDHDAHLSCADHHVEDKHCSPKNTQESCSSQKCASNSCEKIKCISSLASLDGSLDSVEFHESECCTHNSQSAQHDHEHDHHAHFSCADHHVEEKHCAPKNTQECCSSQKCASSSCEQISVELHESGCCTHNSQSAQHDHDIHTPKCDLDDSHLSSPDHHTGHGCCSEKNAQKVSLSPQTCHSETCNLSPCGETKCVDSTARQHAPEGSLELLQDHKHCHQGSFDTSNFVLKSQEKHRKNCTGPCKSRSISVSSEDECRKRLEMIDDCAEAKGHHKMKQHHCDTHLSLRNEGTHPHCKTSNGDEGGAINTAISIKLESDHSNPKPASACKALENRESNNSCKSCKRGSSQLKIGKSCAALEKREYGGCCKSYMKECCRKHGDIRTAVRGGLNEIVIE 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2456692 2465487 + Maker00021810 Lcy2g0304 625069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0304 1250 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 20 959 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Lcy2g0304 1250 PRINTS H+-transporting ATPase (proton pump) signature 605 621 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0304 1250 PRINTS H+-transporting ATPase (proton pump) signature 637 662 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0304 1250 FunFam Putative cadmium/zinc-transporting ATPase 3 17 90 - -
Lcy2g0304 1250 SUPERFAMILY HAD-like 404 706 IPR036412 -
Lcy2g0304 1250 SFLD Haloacid Dehalogenase 387 657 - -
Lcy2g0304 1250 PRINTS P-type cation-transporting ATPase superfamily signature 605 624 - -
Lcy2g0304 1250 PRINTS P-type cation-transporting ATPase superfamily signature 551 561 - -
Lcy2g0304 1250 PRINTS P-type cation-transporting ATPase superfamily signature 629 641 - -
Lcy2g0304 1250 PRINTS P-type cation-transporting ATPase superfamily signature 404 418 - -
Lcy2g0304 1250 PRINTS P-type cation-transporting ATPase superfamily signature 253 267 - -
Lcy2g0304 1250 Pfam E1-E2 ATPase 214 383 - -
Lcy2g0304 1250 NCBIfam HAD-IC family P-type ATPase 178 678 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lcy2g0304 1250 MobiDBLite consensus disorder prediction 760 788 - -
Lcy2g0304 1250 Gene3D - 395 656 IPR023214 -
Lcy2g0304 1250 SUPERFAMILY HMA, heavy metal-associated domain 18 91 IPR036163 GO:0046872(InterPro)
Lcy2g0304 1250 FunFam Putative cadmium/zinc-transporting ATPase 3 415 537 - -
Lcy2g0304 1250 Gene3D - 415 537 IPR023299 GO:0000166(InterPro)
Lcy2g0304 1250 NCBIfam heavy metal translocating P-type ATPase 155 708 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Lcy2g0304 1250 ProSiteProfiles Heavy-metal-associated domain profile. 21 87 IPR006121 GO:0046872(InterPro)
Lcy2g0304 1250 CDD P-type_ATPase_HM 105 707 - -
Lcy2g0304 1250 FunFam Copper-transporting ATPase 1, putative 193 307 - -
Lcy2g0304 1250 SUPERFAMILY Calcium ATPase, transduction domain A 218 303 IPR008250 -
Lcy2g0304 1250 MobiDBLite consensus disorder prediction 739 788 - -
Lcy2g0304 1250 ProSitePatterns Anaphylatoxin domain signature. 1196 1230 IPR000020 GO:0005576(InterPro)
Lcy2g0304 1250 ProSitePatterns E1-E2 ATPases phosphorylation site. 406 412 IPR018303 -
Lcy2g0304 1250 Gene3D - 193 307 - -
Lcy2g0304 1250 ProSitePatterns Hypothetical cof family signature 2. 605 627 - -
Lcy2g0304 1250 Gene3D - 19 90 - -
Lcy2g0304 1250 Pfam haloacid dehalogenase-like hydrolase 400 619 - -
Lcy2g0304 1250 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 398 IPR023298 -
Lcy2g0304 1250 SFLD p-type atpase 387 657 IPR044492 -
Lcy2g0304 1250 NCBIfam cadmium family heavy metal-translocating P-type ATPase 155 497 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0304 Lcy-Chr2:2456692 Lcy8g0947 Lcy-Chr8:33624983 3.35E-56 dispersed
Lcy2g0298 Lcy-Chr2:2384611 Lcy2g0304 Lcy-Chr2:2456692 2.54E-06 proximal
Lcy6g0365 Lcy-Chr6:3372359 Lcy2g0304 Lcy-Chr2:2456692 1.93E-39 transposed
Lcy9g1938 Lcy-Chr9:44387646 Lcy2g0304 Lcy-Chr2:2456692 1.27E-44 transposed
Lcy2g0304 Lcy-Chr2:2456692 Lcy4g1622 Lcy-Chr4:41100998 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0304 K01534 - csv:101211188 1547.33