Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0311 ATGAAGAGATTACTTCCATTTGAACTAGGAATTCCCACTGTTAGCCTCCCTTCGCATTCGACAATTTGTCGAATAATCTTCGAATCCTTTCATCACAGAGTCTGCAGATTAGCATTTGATGCTACACAGAGGAATGGGCTTCAGTTTGATTCTCTAGAAATCCGGAGTATTGCAATTGCTTATGGTATGTTTTATGTTTTGGTTGGTATCGAGTCAATTCCGGACAGAGTTTCCAAGTTCAGAGATCACAGAGCAGAGGCAGAGACGCAGAGCGGTACACTTGAAGTCACAGTTATTGGTTCTATTGTGCAAATTCTCTATGAGAACACATTGGATATCGATATGAGAGTTGCTGGAAGGAGATTGACCCAGAAGGAATCTGGAAAATGTTCTCACTCCAAGCTGGAAACTGGATCAGAGTTGATTTTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAGAACGAAATCACATGCACAGGCAATTGGTTCAACATTCAAGAGGAGATCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACTATTAGACAACTGGCTGGTAAAAAGTTTCTGCTAAAAAACCTTGATTCAAAATCTTCCAAGGAGTTACTTTTGTCAAAGCTTCAAGGTGGAAAATCCCTGCCATCAAGCAATACGACAGGGAATAAAGAAAAGGTTGAGCCGGTGGCGAAGATAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTAGAGTTAGATGAAGCTTCTCGCCTACAAAGGAGAACAAGATACCTTATAATTAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAAGCCCGAAAAGGAACTTCAGAGAGCCAAGAAGCAGATATTAAAGTGCAAACTGGGAATCCGTGATGCTATTCACCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAGTTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACGGACAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGGTTCACAATGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCATCGCTTAATCATGAGGAAGATTGGCCCTCGGATGATTCTGCAGATGATGACTATGATCCAGATAAGAAGGAGAATGGCTATGGCAATCTAAGTGGGGAAGAAAATGATAAGGATGTTTTGGAGGAGTCAAGTAGTTCGACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAATTGATAGAGATGGTATTGGATGTGAAGATCACTTTGGTGCTAGTAGCAGCATAGTTTCTGATGGATCCAATGAAGAGGGTATCACATGTGGTCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCAGCACAAGAACAAGTTAGTGAAGATGAAGACTGGGGACCTGCCAAAAGAAGACGAAGAGAAAAGGAATGTGATGCTGCGAGTACTCTTATGTCTCTTTGTGAAAGTGAAAAAAAGAGTCAGGAGATTGACGTGGAAGCAGAGAAAAAACTTCTCAATTCGCAAAGTAGATCATTTTTCAGAATTCCTCGTTATGCAGTCGAGAAACTTCGCCGAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTGAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAAAACAAGAAAGGCTGAGGGAGCAACACAACACCATAGTTCTACTAATACTTCCAACGAGCCCGGATTAGCAGATGCAAAGGAAATGGCTGCAAATCTTCTTTCATCAGAGGACGCACCAATAAAAGAACTGCAGCTGAAGTCGCGCAATAATCATTACAAGAAAAAGCAGCACAGAAAATCATCACTTGTATCTTCCAACAATAACAAGGATGCTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGACGGTTAATTTTGTAGCTAGAGGTGGAGGTCAAGAAGCAGAAGTCGAGATGGAGAGACTGTGTAAAATTAAAGGTAGATTAGAGTTAATGAAGCAGAAATTACTTAGACTATCATCAAATAAGAAAGATGATGGGATTTTAGATAGGTCAAACATGTTTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAAAAAGTTTGA 2490 40.28 MKRLLPFELGIPTVSLPSHSTICRIIFESFHHRVCRLAFDATQRNGLQFDSLEIRSIAIAYGMFYVLVGIESIPDRVSKFRDHRAEAETQSGTLEVTVIGSIVQILYENTLDIDMRVAGRRLTQKESGKCSHSKLETGSELILPLKLKRCSKISHSKQKKSRTKSHAQAIGSTFKRRSLPKSLSKGNKNVTIRQLAGKKFLLKNLDSKSSKELLLSKLQGGKSLPSSNTTGNKEKVEPVAKINQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRAKKQILKCKLGIRDAIHQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTDNIPPGDQGWFCKFCECKMEILEGMNAHLGTRFTMNISWEDVFKEEAAFPDGGNASLNHEEDWPSDDSADDDYDPDKKENGYGNLSGEENDKDVLEESSSSTSLSWSLDGEDLIDRDGIGCEDHFGASSSIVSDGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPAQEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQEIDVEAEKKLLNSQSRSFFRIPRYAVEKLRRVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALKTRKAEGATQHHSSTNTSNEPGLADAKEMAANLLSSEDAPIKELQLKSRNNHYKKKQHRKSSLVSSNNNKDAFDFGDDISLKNLLKNRKTKVKKTVNFVARGGGQEAEVEMERLCKIKGRLELMKQKLLRLSSNKKDDGILDRSNMFEQSIVYVPVAVLKEKV 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2542760 2550980 + Maker00022499 Lcy2g0311 625076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0311 829 CDD PHD_PRHA_like 353 405 IPR045876 -
Lcy2g0311 829 ProSitePatterns Zinc finger PHD-type signature. 354 405 IPR019786 -
Lcy2g0311 829 Pfam Homeodomain 619 663 IPR001356 GO:0003677(InterPro)
Lcy2g0311 829 MobiDBLite consensus disorder prediction 165 187 - -
Lcy2g0311 829 MobiDBLite consensus disorder prediction 220 234 - -
Lcy2g0311 829 MobiDBLite consensus disorder prediction 153 187 - -
Lcy2g0311 829 MobiDBLite consensus disorder prediction 220 261 - -
Lcy2g0311 829 ProSiteProfiles 'Homeobox' domain profile. 608 668 IPR001356 GO:0003677(InterPro)
Lcy2g0311 829 Pfam PHD-finger 354 405 IPR019787 -
Lcy2g0311 829 ProSiteProfiles Zinc finger PHD-type profile. 351 408 IPR019787 -
Lcy2g0311 829 SMART PHD_3 353 406 IPR001965 -
Lcy2g0311 829 MobiDBLite consensus disorder prediction 440 496 - -
Lcy2g0311 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 345 402 IPR013083 -
Lcy2g0311 829 Gene3D - 610 683 - -
Lcy2g0311 829 FunFam pathogenesis-related homeodomain protein-like 345 405 - -
Lcy2g0311 829 FunFam pathogenesis-related homeodomain protein 610 674 - -
Lcy2g0311 829 CDD homeodomain 616 669 IPR001356 GO:0003677(InterPro)
Lcy2g0311 829 MobiDBLite consensus disorder prediction 464 486 - -
Lcy2g0311 829 SUPERFAMILY FYVE/PHD zinc finger 344 411 IPR011011 -
Lcy2g0311 829 SMART HOX_1 610 672 IPR001356 GO:0003677(InterPro)
Lcy2g0311 829 SUPERFAMILY Homeodomain-like 610 674 IPR009057 -
Lcy2g0311 829 MobiDBLite consensus disorder prediction 668 689 - -
Lcy2g0311 829 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 146 825 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0311 Lcy-Chr2:2542760 Lcy6g0491 Lcy-Chr6:4617113 1.57E-51 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19688 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0311 - - - 0.0