Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0311 | ATGAAGAGATTACTTCCATTTGAACTAGGAATTCCCACTGTTAGCCTCCCTTCGCATTCGACAATTTGTCGAATAATCTTCGAATCCTTTCATCACAGAGTCTGCAGATTAGCATTTGATGCTACACAGAGGAATGGGCTTCAGTTTGATTCTCTAGAAATCCGGAGTATTGCAATTGCTTATGGTATGTTTTATGTTTTGGTTGGTATCGAGTCAATTCCGGACAGAGTTTCCAAGTTCAGAGATCACAGAGCAGAGGCAGAGACGCAGAGCGGTACACTTGAAGTCACAGTTATTGGTTCTATTGTGCAAATTCTCTATGAGAACACATTGGATATCGATATGAGAGTTGCTGGAAGGAGATTGACCCAGAAGGAATCTGGAAAATGTTCTCACTCCAAGCTGGAAACTGGATCAGAGTTGATTTTACCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAACAGAAAAAATCAAGAACGAAATCACATGCACAGGCAATTGGTTCAACATTCAAGAGGAGATCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACTATTAGACAACTGGCTGGTAAAAAGTTTCTGCTAAAAAACCTTGATTCAAAATCTTCCAAGGAGTTACTTTTGTCAAAGCTTCAAGGTGGAAAATCCCTGCCATCAAGCAATACGACAGGGAATAAAGAAAAGGTTGAGCCGGTGGCGAAGATAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTAGAGTTAGATGAAGCTTCTCGCCTACAAAGGAGAACAAGATACCTTATAATTAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAAGCCCGAAAAGGAACTTCAGAGAGCCAAGAAGCAGATATTAAAGTGCAAACTGGGAATCCGTGATGCTATTCACCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAGTTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACGGACAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGGTTCACAATGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCATCGCTTAATCATGAGGAAGATTGGCCCTCGGATGATTCTGCAGATGATGACTATGATCCAGATAAGAAGGAGAATGGCTATGGCAATCTAAGTGGGGAAGAAAATGATAAGGATGTTTTGGAGGAGTCAAGTAGTTCGACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAATTGATAGAGATGGTATTGGATGTGAAGATCACTTTGGTGCTAGTAGCAGCATAGTTTCTGATGGATCCAATGAAGAGGGTATCACATGTGGTCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCAGCACAAGAACAAGTTAGTGAAGATGAAGACTGGGGACCTGCCAAAAGAAGACGAAGAGAAAAGGAATGTGATGCTGCGAGTACTCTTATGTCTCTTTGTGAAAGTGAAAAAAAGAGTCAGGAGATTGACGTGGAAGCAGAGAAAAAACTTCTCAATTCGCAAAGTAGATCATTTTTCAGAATTCCTCGTTATGCAGTCGAGAAACTTCGCCGAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTGAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAAAACAAGAAAGGCTGAGGGAGCAACACAACACCATAGTTCTACTAATACTTCCAACGAGCCCGGATTAGCAGATGCAAAGGAAATGGCTGCAAATCTTCTTTCATCAGAGGACGCACCAATAAAAGAACTGCAGCTGAAGTCGCGCAATAATCATTACAAGAAAAAGCAGCACAGAAAATCATCACTTGTATCTTCCAACAATAACAAGGATGCTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGACGGTTAATTTTGTAGCTAGAGGTGGAGGTCAAGAAGCAGAAGTCGAGATGGAGAGACTGTGTAAAATTAAAGGTAGATTAGAGTTAATGAAGCAGAAATTACTTAGACTATCATCAAATAAGAAAGATGATGGGATTTTAGATAGGTCAAACATGTTTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAAAAAGTTTGA | 2490 | 40.28 | MKRLLPFELGIPTVSLPSHSTICRIIFESFHHRVCRLAFDATQRNGLQFDSLEIRSIAIAYGMFYVLVGIESIPDRVSKFRDHRAEAETQSGTLEVTVIGSIVQILYENTLDIDMRVAGRRLTQKESGKCSHSKLETGSELILPLKLKRCSKISHSKQKKSRTKSHAQAIGSTFKRRSLPKSLSKGNKNVTIRQLAGKKFLLKNLDSKSSKELLLSKLQGGKSLPSSNTTGNKEKVEPVAKINQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRAKKQILKCKLGIRDAIHQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTDNIPPGDQGWFCKFCECKMEILEGMNAHLGTRFTMNISWEDVFKEEAAFPDGGNASLNHEEDWPSDDSADDDYDPDKKENGYGNLSGEENDKDVLEESSSSTSLSWSLDGEDLIDRDGIGCEDHFGASSSIVSDGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPAQEQVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQEIDVEAEKKLLNSQSRSFFRIPRYAVEKLRRVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALKTRKAEGATQHHSSTNTSNEPGLADAKEMAANLLSSEDAPIKELQLKSRNNHYKKKQHRKSSLVSSNNNKDAFDFGDDISLKNLLKNRKTKVKKTVNFVARGGGQEAEVEMERLCKIKGRLELMKQKLLRLSSNKKDDGILDRSNMFEQSIVYVPVAVLKEKV | 829 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2542760 | 2550980 | + | Maker00022499 | Lcy2g0311 | 625076 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0311 | 829 | CDD | PHD_PRHA_like | 353 | 405 | IPR045876 | - | |
Lcy2g0311 | 829 | ProSitePatterns | Zinc finger PHD-type signature. | 354 | 405 | IPR019786 | - | |
Lcy2g0311 | 829 | Pfam | Homeodomain | 619 | 663 | IPR001356 | GO:0003677(InterPro) | |
Lcy2g0311 | 829 | MobiDBLite | consensus disorder prediction | 165 | 187 | - | - | |
Lcy2g0311 | 829 | MobiDBLite | consensus disorder prediction | 220 | 234 | - | - | |
Lcy2g0311 | 829 | MobiDBLite | consensus disorder prediction | 153 | 187 | - | - | |
Lcy2g0311 | 829 | MobiDBLite | consensus disorder prediction | 220 | 261 | - | - | |
Lcy2g0311 | 829 | ProSiteProfiles | 'Homeobox' domain profile. | 608 | 668 | IPR001356 | GO:0003677(InterPro) | |
Lcy2g0311 | 829 | Pfam | PHD-finger | 354 | 405 | IPR019787 | - | |
Lcy2g0311 | 829 | ProSiteProfiles | Zinc finger PHD-type profile. | 351 | 408 | IPR019787 | - | |
Lcy2g0311 | 829 | SMART | PHD_3 | 353 | 406 | IPR001965 | - | |
Lcy2g0311 | 829 | MobiDBLite | consensus disorder prediction | 440 | 496 | - | - | |
Lcy2g0311 | 829 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 345 | 402 | IPR013083 | - | |
Lcy2g0311 | 829 | Gene3D | - | 610 | 683 | - | - | |
Lcy2g0311 | 829 | FunFam | pathogenesis-related homeodomain protein-like | 345 | 405 | - | - | |
Lcy2g0311 | 829 | FunFam | pathogenesis-related homeodomain protein | 610 | 674 | - | - | |
Lcy2g0311 | 829 | CDD | homeodomain | 616 | 669 | IPR001356 | GO:0003677(InterPro) | |
Lcy2g0311 | 829 | MobiDBLite | consensus disorder prediction | 464 | 486 | - | - | |
Lcy2g0311 | 829 | SUPERFAMILY | FYVE/PHD zinc finger | 344 | 411 | IPR011011 | - | |
Lcy2g0311 | 829 | SMART | HOX_1 | 610 | 672 | IPR001356 | GO:0003677(InterPro) | |
Lcy2g0311 | 829 | SUPERFAMILY | Homeodomain-like | 610 | 674 | IPR009057 | - | |
Lcy2g0311 | 829 | MobiDBLite | consensus disorder prediction | 668 | 689 | - | - | |
Lcy2g0311 | 829 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 146 | 825 | - | GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0311 | Lcy-Chr2:2542760 | Lcy6g0491 | Lcy-Chr6:4617113 | 1.57E-51 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19688 | None | None | None | None | Lcy | TF |
Pathway information
