Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0318 ATGGAAAGTATCGGAGACGATTACATGGCTTACTTGGGGAACAGCATGTTCATAGCCGAAGAGCTCGACAGTTGGGGATTCGACGAGCCGGCTTCCGGCTACTATGATTCGAGTTCGCCGGAGGGAGTTCTGTCGCCGTCGGCGGCTTCGAAGAACATCGTATCGGAGAGGAATAGGAGGAGGAAGCTCAACGAGAGGCTTTTTGCTCTTCGATCGGTCGTTCCCAATATCACTAAGATGGATAAGGCTTCCATTATAAAAGATGCAATCGATTACATCCAAGATTTGCACGAACAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCAGGTAAGTTGAAGAAGATAACAGGGTATGAGTTTGATCAGGAGCTGCCATTGTTGCTGAGATCAAAGAGGAAGAAAACTGAGAAGTTCATCTATGATTCTCCAGCTTCAAGAACTTCCCCCATTGAAGTGCTGGATTTGAGTGTGACATATATGGGGGAAAGAACAATGGTGGTGAGCTTGACATGCTGTAAAAGGGCAGATTCAATGGTTAAACTATGTGAAGTTTTTGAATCACTGAAGCTCAAGATCATTACAGCCAATATCACTGCTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGTAACTGCCCTCCGCCCTCTCTCTCTTTTGCTCATAAGAAATTCAAAACAAACTGAAACTGGGGCTGAGCAAGAGGAGAGAGAATACTTGAAGATTAAAATAGAAACAGCCATTGCAGGGGTTCAGAGAATTCTTTTCTTGATGGGGTGGAGGCGGGGATGGATAGACAAGCGGCGAAGGGCTAAAGGCAGGCAGGTGGCCGAGATAGGGGGTTGGGGAGAAGGAAGAGAGAGAGGGCGGGATGGAGGTGGGGAGTCAGTGATGGTGTATGTGGGAGGCTGTAGGAGTGGGAGTAGGGCTATGGGTAAGAGAGGGAGAGACGGTGTGGTGGGGAGGGCTCCAGCGATGGTACGGAGGATAGAAATGGGAGCATGGGTTGGGAAAGAGTGA 1032 48.06 MESIGDDYMAYLGNSMFIAEELDSWGFDEPASGYYDSSSPEGVLSPSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIQDLHEQERRIQAEIYELESGKLKKITGYEFDQELPLLLRSKRKKTEKFIYDSPASRTSPIEVLDLSVTYMGERTMVVSLTCCKRADSMVKLCEVFESLKLKIITANITAVSGRLLKTVFIEVTALRPLSLLLIRNSKQTETGAEQEEREYLKIKIETAIAGVQRILFLMGWRRGWIDKRRRAKGRQVAEIGGWGEGRERGRDGGGESVMVYVGGCRSGSRAMGKRGRDGVVGRAPAMVRRIEMGAWVGKE 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2593551 2598459 - Maker00022287 Lcy2g0318 625083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0318 343 Gene3D - 45 113 IPR036638 GO:0046983(InterPro)
Lcy2g0318 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 111 IPR036638 GO:0046983(InterPro)
Lcy2g0318 343 Pfam Helix-loop-helix DNA-binding domain 53 97 IPR011598 GO:0046983(InterPro)
Lcy2g0318 343 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 47 230 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy2g0318 343 SMART finulus 53 102 IPR011598 GO:0046983(InterPro)
Lcy2g0318 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983(InterPro)
Lcy2g0318 343 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0318 Lcy-Chr2:2593551 Lcy3g0893 Lcy-Chr3:31841532 2.34E-11 dispersed
Lcy10g1502 Lcy-Chr10:39448458 Lcy2g0318 Lcy-Chr2:2593551 1.23E-06 transposed
Lcy7g0177 Lcy-Chr7:1575147 Lcy2g0318 Lcy-Chr2:2593551 1.53E-17 transposed
Lcy8g1939 Lcy-Chr8:45641550 Lcy2g0318 Lcy-Chr2:2593551 1.54E-19 transposed
Lcy2g0318 Lcy-Chr2:2593551 Lcy4g1602 Lcy-Chr4:40588805 2.22E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19690 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0318 - - - 0.0