Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0329 ATGGCCGTCGATCTCGCCGCCTTTCCGCCCAGCTTCGACCATCAAGCCGCCATCCAAGAAGCCGCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCGCCTCTTATCCAAACAACAATCCTCTCCGACTCTCAACCACCCCCATCTCGACTGCTCCCAAGTCACCGATTTCACCGTCTCCAAATTCAAGCGACTCATCTCCCTCCTCAACCGGACCGGCCACGCCAGGTTCCGTCGCGGCCCCTCCCCTGTTTCCGATTCCCCCAATCCCGTCCTCAATTCCCTCGATCCGCCGCTCAAATCCCCCAATCCGACCTCCACAGTCGATTTCCTTAAACCCAATCTCACTCCTCCGCCCAAATCGCCCGATTCCAGGGCTCCCACTGAGTCCACCACGACGTCGTCTTTCATGTCTACCGTCACCGCCGACGGCAGCGTCTCGAACGGGAAGCTCGGTCTCTCACTCTTCACGACTCCGGCGGTCTCCTCAGGTAAGCCGCCGCTGTCGTCGAAGAGAAAGTGCGAAGATAGCTCTCGATTGGCTTGCAAGATCTCTTCGAAGCCTTGCCACTGCGCGAAGCGAAGGAAATCTGGAGATAAGAAGACGGTACGAGTTCCGGCGATCAGTTCTAAGATCGCCGATATACCTTCCGATGAATACTCCTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCGCCCTATCCCAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAGAAAGTGGAGAGGGCTCGTGACGATCCGGCGATGCTCCTCGTAACTTACGACGGCGATCACCGTCACCCGCAGGCCACGGTGCCCAGGGCGGTGACCGATGCCAGCGTCGGCTTCGTTTCCCAGAAGTGTTGA 891 57.91 MAVDLAAFPPSFDHQAAIQEAASAGLQSMEHLIRLLSKQQSSPTLNHPHLDCSQVTDFTVSKFKRLISLLNRTGHARFRRGPSPVSDSPNPVLNSLDPPLKSPNPTSTVDFLKPNLTPPPKSPDSRAPTESTTTSSFMSTVTADGSVSNGKLGLSLFTTPAVSSGKPPLSSKRKCEDSSRLACKISSKPCHCAKRRKSGDKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPAMLLVTYDGDHRHPQATVPRAVTDASVGFVSQKC 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2712649 2714564 + Maker00022496 Lcy2g0329 625094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0329 296 ProSiteProfiles WRKY domain profile. 212 278 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0329 296 MobiDBLite consensus disorder prediction 87 113 - -
Lcy2g0329 296 Pfam WRKY DNA -binding domain 219 276 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0329 296 MobiDBLite consensus disorder prediction 76 142 - -
Lcy2g0329 296 MobiDBLite consensus disorder prediction 126 142 - -
Lcy2g0329 296 SUPERFAMILY WRKY DNA-binding domain 215 277 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0329 296 FunFam WRKY transcription factor 65 201 278 - -
Lcy2g0329 296 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 279 IPR044810 GO:0003700(InterPro)
Lcy2g0329 296 Gene3D WRKY domain 203 278 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0329 296 Pfam Plant zinc cluster domain 172 215 IPR018872 -
Lcy2g0329 296 SMART WRKY_cls 217 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0329 Lcy-Chr2:2712649 Lcy9g1768 Lcy-Chr9:42891173 5.50E-93 dispersed
Lcy2g0329 Lcy-Chr2:2712649 Lcy1g0971 Lcy-Chr1:8514721 2.40E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19691 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0329 - - - 0.0