Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy2g0329 | ATGGCCGTCGATCTCGCCGCCTTTCCGCCCAGCTTCGACCATCAAGCCGCCATCCAAGAAGCCGCCTCCGCCGGTTTACAGAGCATGGAGCATCTAATCCGCCTCTTATCCAAACAACAATCCTCTCCGACTCTCAACCACCCCCATCTCGACTGCTCCCAAGTCACCGATTTCACCGTCTCCAAATTCAAGCGACTCATCTCCCTCCTCAACCGGACCGGCCACGCCAGGTTCCGTCGCGGCCCCTCCCCTGTTTCCGATTCCCCCAATCCCGTCCTCAATTCCCTCGATCCGCCGCTCAAATCCCCCAATCCGACCTCCACAGTCGATTTCCTTAAACCCAATCTCACTCCTCCGCCCAAATCGCCCGATTCCAGGGCTCCCACTGAGTCCACCACGACGTCGTCTTTCATGTCTACCGTCACCGCCGACGGCAGCGTCTCGAACGGGAAGCTCGGTCTCTCACTCTTCACGACTCCGGCGGTCTCCTCAGGTAAGCCGCCGCTGTCGTCGAAGAGAAAGTGCGAAGATAGCTCTCGATTGGCTTGCAAGATCTCTTCGAAGCCTTGCCACTGCGCGAAGCGAAGGAAATCTGGAGATAAGAAGACGGTACGAGTTCCGGCGATCAGTTCTAAGATCGCCGATATACCTTCCGATGAATACTCCTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCGCCCTATCCCAGAGGGTATTATAGATGCAGCACCGTCAAAGGATGTCCGGCGAGGAAGAAAGTGGAGAGGGCTCGTGACGATCCGGCGATGCTCCTCGTAACTTACGACGGCGATCACCGTCACCCGCAGGCCACGGTGCCCAGGGCGGTGACCGATGCCAGCGTCGGCTTCGTTTCCCAGAAGTGTTGA | 891 | 57.91 | MAVDLAAFPPSFDHQAAIQEAASAGLQSMEHLIRLLSKQQSSPTLNHPHLDCSQVTDFTVSKFKRLISLLNRTGHARFRRGPSPVSDSPNPVLNSLDPPLKSPNPTSTVDFLKPNLTPPPKSPDSRAPTESTTTSSFMSTVTADGSVSNGKLGLSLFTTPAVSSGKPPLSSKRKCEDSSRLACKISSKPCHCAKRRKSGDKKTVRVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPAMLLVTYDGDHRHPQATVPRAVTDASVGFVSQKC | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2712649 | 2714564 | + | Maker00022496 | Lcy2g0329 | 625094 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy2g0329 | 296 | ProSiteProfiles | WRKY domain profile. | 212 | 278 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy2g0329 | 296 | MobiDBLite | consensus disorder prediction | 87 | 113 | - | - | |
Lcy2g0329 | 296 | Pfam | WRKY DNA -binding domain | 219 | 276 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy2g0329 | 296 | MobiDBLite | consensus disorder prediction | 76 | 142 | - | - | |
Lcy2g0329 | 296 | MobiDBLite | consensus disorder prediction | 126 | 142 | - | - | |
Lcy2g0329 | 296 | SUPERFAMILY | WRKY DNA-binding domain | 215 | 277 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy2g0329 | 296 | FunFam | WRKY transcription factor 65 | 201 | 278 | - | - | |
Lcy2g0329 | 296 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 17 | 279 | IPR044810 | GO:0003700(InterPro) | |
Lcy2g0329 | 296 | Gene3D | WRKY domain | 203 | 278 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy2g0329 | 296 | Pfam | Plant zinc cluster domain | 172 | 215 | IPR018872 | - | |
Lcy2g0329 | 296 | SMART | WRKY_cls | 217 | 277 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy2g0329 | Lcy-Chr2:2712649 | Lcy9g1768 | Lcy-Chr9:42891173 | 5.50E-93 | dispersed | |
Lcy2g0329 | Lcy-Chr2:2712649 | Lcy1g0971 | Lcy-Chr1:8514721 | 2.40E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19691 | None | None | None | None | Lcy | TF |
Pathway information
