Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy2g0336 ATGGCAGACCAAGATGAGCTCTGCAACATCAGGCTTGGCCTTGGCCTTGGCTTGGGATTTGGCGAATATGTCCCTAAAAAGATGCAGAAAATCAACAACAACAGCCCCAAATTCTTCTCTGATCGTCTCTCCTTCACTCTCATTCCAAAAGAGGAACCCGCCATTAACAACAACAACATGGAGCTCGAAGAAGCTAATGAAACTTCTCAAGATTCATCCTTTGGAAGAAGAGATAACAATTCTTCCAACAATAATAATACTAACAATTCTTACAACGCCATTAGTGGATCAGAAAGAGAGAGGAAAAAGCTTAGGCTTTCCAAAGAACAGTCCACTTTGCTCGAAGAAAACTTCAAACTTCACACCACTTTGAATCCGGCTCAGAAGCAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAATTGAAACAAACGGAAGTAGATTGCGAGTTTTTGAAGAAATGTTGCGAAAGGCTGAACGAAGAGAATCGAAGGTTGAAGAAAGAGTTGCAGGAATTACGATCCATAAAACTTGGAGCTTCACAGTTGTATATTCAGCTACCCAAGGCGGCGACGCTCACAATTTGCCCTTCATGCGACAAAATTACGAGGACGGCCGCCGCCAACGCCGCCGTGGAGGCCAAATCTCCGCCACAATAA 702 44.02 MADQDELCNIRLGLGLGLGFGEYVPKKMQKINNNSPKFFSDRLSFTLIPKEEPAINNNNMELEEANETSQDSSFGRRDNNSSNNNNTNNSYNAISGSERERKKLRLSKEQSTLLEENFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELQELRSIKLGASQLYIQLPKAATLTICPSCDKITRTAAANAAVEAKSPPQ 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2770043 2771371 + Maker00022034 Lcy2g0336 625101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy2g0336 233 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy2g0336 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 222 IPR050762 -
Lcy2g0336 233 CDD homeodomain 101 158 IPR001356 GO:0003677(InterPro)
Lcy2g0336 233 SMART halz 157 200 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0336 233 Pfam Homeobox associated leucine zipper 157 189 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy2g0336 233 Coils Coil 156 190 - -
Lcy2g0336 233 Gene3D - 94 162 - -
Lcy2g0336 233 SMART HOX_1 99 161 IPR001356 GO:0003677(InterPro)
Lcy2g0336 233 SUPERFAMILY Homeodomain-like 86 158 IPR009057 -
Lcy2g0336 233 MobiDBLite consensus disorder prediction 64 102 - -
Lcy2g0336 233 MobiDBLite consensus disorder prediction 64 95 - -
Lcy2g0336 233 Pfam Homeodomain 101 155 IPR001356 GO:0003677(InterPro)
Lcy2g0336 233 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0336 Lcy-Chr2:2770043 Lcy3g1945 Lcy-Chr3:46602999 8.25E-50 dispersed
Lcy2g0336 Lcy-Chr2:2770043 Lcy1g0879 Lcy-Chr1:7567121 3.85E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19692 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy2g0336 K09338 - csv:101203427 264.618